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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCCATTCTCTCCGCGCCCCGTTTTCCGGCGAAATCGCCGGCGAGTCACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccccgttttacatctcagctaccgtttatttccctttcgtcttctcagatctgtctctttttctgtgcaacgatcaattgcgctcattcctgc...

Basic information

species Glycine max
transcript GLYMA10G35890.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193457651|gb|FK424943.1|FK424943
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAG                      
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC----AGgttctctccc ... ctgtaga
EST: gi|193662810|gb|FK603248.1|FK603248
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG                         TATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGA
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ctgtagatagTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGA
EST: gi|193626503|gb|FK575737.1|FK575737
EST:     CCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAG                      
genomic: CCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC----AGgttctctccc ... ctgtaga
EST: gi|193460050|gb|FK426595.1|FK426595
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAG                      
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC----AGgttctctccc ... ctgtaga

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTGCCATTCTCTCCGCGCCCCGTTTTCCGGCGAAATCGCCGGCGAGTCACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccccgttttacatctcagctaccgtttatttccctttcgtcttctcagatctgtctctttttctgtgcaacgatcaattgcgctcattcctgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc