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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCCATTCTCTCCGCGCCCCGTTTTCCGGCGAAATCGCCGGCGAGTCACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccccgttttacatctcagctaccgtttatttccctttcgtcttctcagatctgtctctttttctgtgcaacgatcaattgcgctcattcctgc...

Basic information

species Glycine max
transcript GLYMA10G35890.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193460050|gb|FK426595.1|FK426595
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG                         ATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ttgtctgtagATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
EST: gi|193662810|gb|FK603248.1|FK603248
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC--                         --AGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ttgtctgtagATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
EST: gi|193486059|gb|FK452190.1|FK452190
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG                         ATAGTATCTATTTTTGATATAA
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ttgtctgtagATAGTATCTATTTTTGATATAA
EST: gi|208244242|gb|GE039417.1|GE039417
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG                         ATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ttgtctgtagATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
EST: gi|193457651|gb|FK424943.1|FK424943
EST:     ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG                         ATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ttgtctgtagATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
EST: gi|193626503|gb|FK575737.1|FK575737
EST:     CCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG                         ATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA
genomic: CCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ttgtctgtagATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAA