Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAAGCTTCTCGTCTCCGATGAGGCTCGCAGGGAGTTCTCCAATCTCCGTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctctttttcttatacattagatttacgatgcgaatttccctctctgttgttcttatatgttagatcgatttgattttagggctcatcactgat...

Basic information

species Glycine max
transcript GLYMA10G35750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193473481|gb|FK438778.1|FK438778
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCA
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCA
EST: gi|213590406|gb|DB968040.1|DB968040
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192302155|gb|FG997263.1|FG997263
EST:     GTCGCGCTTTCGGCGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|214007866|gb|DB986455.1|DB986455
EST:     CAAGTTCAGCCAG                         GAACCTGAACCCATAGA-TGCGGATAAAGATAGAAAAGGAATTCAGG-A-T
genomic: CAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTG-GGATTACTATAGAAAAGGAATT--GGCACT
EST: gi|192334425|gb|FK024118.1|FK024118
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192334424|gb|FK024117.1|FK024117
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298172616|gb|HO019656.1|HO019656
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|58018430|gb|CX705172.1|CX705172
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|4290733|gb|AI437519.1|AI437519
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|151403195|gb|EV273005.1|EV273005
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|151413076|gb|EV282884.1|EV282884
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTGTAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|15286464|gb|BI470355.1|BI470355
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192320476|gb|FK012334.1|FK012334
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCAAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192295734|gb|FG990828.1|FG990828
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|213589697|gb|DB973256.1|DB973256
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|151399048|gb|EV268919.1|EV268919
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAGAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|193712067|gb|FK648810.1|FK648810
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCA
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCA
EST: gi|18848601|gb|BM567756.1|BM567756
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|9564208|gb|BE473717.1|BE473717
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192329215|gb|FK020134.1|FK020134
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|19938147|gb|BQ081583.1|BQ081583
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|213597321|gb|DB964394.1|DB964394
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192320477|gb|FK012335.1|FK012335
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCAAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|209699416|gb|BW664135.1|BW664135
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298163206|gb|HO011939.1|HO011939
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|15663571|gb|BI700942.1|BI700942
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|213606671|gb|DB972555.1|DB972555
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298172356|gb|HO019396.1|HO019396
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|19934667|gb|BQ079697.1|BQ079697
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|4405525|gb|AI507674.1|AI507674
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|254345423|gb|GR855866.1|GR855866
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192308179|gb|FK001277.1|FK001277
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|15202357|gb|BI425359.1|BI425359
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|193525537|gb|FK478046.1|FK478046
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACT
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACT
EST: gi|192309712|gb|FK001018.1|FK001018
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|208058731|gb|GD858203.1|GD858203
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|193723412|gb|FK657120.1|FK657120
EST:     ACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: ACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192302154|gb|FG997262.1|FG997262
EST:     GTCGCGCTTTCGGCGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192299291|gb|FG988691.1|FG988691
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|8282974|gb|BE020535.1|BE020535
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298199220|gb|HO042583.1|HO042583
EST:     GTCGCGTTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|9987567|gb|BE661675.1|BE661675
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298170488|gb|HO019112.1|HO019112
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATCGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|58021780|gb|CX708521.1|CX708521
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298166983|gb|HO010422.1|HO010422
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|209699417|gb|BW664136.1|BW664136
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|12496502|gb|BG047096.1|BG047096
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|19935135|gb|BQ080165.1|BQ080165
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|151404461|gb|EV274275.1|EV274275
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298163051|gb|HO011784.1|HO011784
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298184504|gb|HO029717.1|HO029717
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|254345422|gb|GR855865.1|GR855865
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298172709|gb|HO019749.1|HO019749
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|58014671|gb|CX701413.1|CX701413
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298179912|gb|HO025127.1|HO025127
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298191701|gb|HO035783.1|HO035783
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|58019285|gb|CX706027.1|CX706027
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|193494508|gb|FK458058.1|FK458058
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298163644|gb|HO012377.1|HO012377
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|192308180|gb|FK001278.1|FK001278
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|213617607|gb|DB969319.1|DB969319
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|37994969|gb|CF806558.1|CF806558
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|151409411|gb|EV279219.1|EV279219
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|298189156|gb|HO037559.1|HO037559
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|24135641|gb|BU926151.1|BU926151
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|213601186|gb|DB956494.1|DB956494
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|21678267|gb|BQ630618.1|BQ630618
EST:     GTCGCGCTTTCGACGAGGTT-TCNCTCAATTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATATACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
EST: gi|151410606|gb|EV280421.1|EV280421
EST:     GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAG                         GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC
genomic: GTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctc ... cattctgcagGAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGAAGCTTCTCGTCTCCGATGAGGCTCGCAGGGAGTTCTCCAATCTCCGTCGCGCTTTCGACGAGGTTAACTCCCAACTCGAAACCAAGTTCAGCCAGgtaccttctctttttcttatacattagatttacgatgcgaatttccctctctgttgttcttatatgttagatcgatttgattttagggctcatcactgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc