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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGAGAAGATCGGGGATTAACGAACTATGAATTGAACTTTCTCAATGGCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaaatcctaattcaatttctaacttcaccatcaataatttcaatttcagcttatttttattatttatttttctatttcagggagcattcgcaa...

Basic information

species Glycine max
transcript GLYMA10G35210.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35210.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g14654.3 (Oryza sativa), 5'ss of exon 2
AAGAAGAGAAGATCGGGGATTAACGAACTATGAATTGAACTTTCT--CAATGGCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgt--caaatca-aatcctaattcaatttctaact-tcaccatcaataatttcaatttcagcttatttttattatttatttt-----tctatttcagggagcattcgcaa------------------------
  | |   | |||   | ||    |||| | || ||| | |      | ||||||||||| ||||| || |||||||||||| |||||||| |  || | ||||  |   | |  ||||  | |||  | || ||  |     |   |  | | ||||| | | | | | | | || |  ||      |  ||||||    | ||     |                        
--GTAAGCAGGATTCTGAATCTGAGAACGAGGAGTTGGATTGGGGGACTATGGCTCAGATCCCCAATCTCGACAATGCTCCTCTCAATCTCGCGGCCCTCAGgtatctcgtgatgatccccactcatctgcttacccttgtgtttgttcctgtgaattttaacctgtatgtttgatgtgcttcgactgtgaatttcaacatgtatgtttgatgtgcttcgactggtggcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591873|gb|DB973424.1|DB973424
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC