Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGAGAAGATCGGGGATTAACGAACTATGAATTGAACTTTCTCAATGGCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaaatcctaattcaatttctaacttcaccatcaataatttcaatttcagcttatttttattatttatttttctatttcag

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g14654.3 (Oryza sativa), 5'ss of exon 2
AAGAAGAGAAGATCGGGGATTAACGAACTATGAATTGAACTTTCT--CAATGGCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgt--caaatca-aatcctaattcaatttctaact-tcaccatcaataatttcaatttcagcttatttttattatttatttt-----tctatttcag-------------------------------------
  | |   | |||   | ||    |||| | || ||| | |      | ||||||||||| ||||| || |||||||||||| |||||||| |  || | ||||  |   | |  ||||  | |||  | || ||  |     |   |  | | ||||| | | | | | | | || |  ||      |  ||||||                                      
--GTAAGCAGGATTCTGAATCTGAGAACGAGGAGTTGGATTGGGGGACTATGGCTCAGATCCCCAATCTCGACAATGCTCCTCTCAATCTCGCGGCCCTCAGgtatctcgtgatgatccccactcatctgcttacccttgtgtttgttcctgtgaattttaacctgtatgtttgatgtgcttcgactgtgaatttcaacatgtatgtttgatgtgcttcgactggtggcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720828|gb|FK658992.1|FK658992
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|207680094|gb|GD663708.1|GD663708
EST:     GCTCAGATTCCCAACCTAGACAATGTTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|213611506|gb|DB960786.1|DB960786
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|193630879|gb|FK580512.1|FK580512
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|193520537|gb|FK475546.1|FK475546
EST:     CTCAGATTCCCAACTTAGACAATGCTCCTGTCAAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAAGAGCTCCTCAACATCCTCAAGTAAT
genomic: CTCAGATTCCCAACCTAGACAATGCTCCTGTCAA-TCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAA-GAGCTCCTCAACATCCTCAAG-AAT
EST: gi|193329364|gb|FK296546.1|FK296546
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|208134628|gb|GD927409.1|GD927409
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAA
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAA
EST: gi|193307787|gb|FK271949.1|FK271949
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCT
EST: gi|193643308|gb|FK590791.1|FK590791
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|193528642|gb|FK486860.1|FK486860
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT