Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGCTTCGAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAgtaagtctaattactaactaattcttcccataaattaaccacgtattaaaattatgaaccacgaattagttactagtttgcatgtataattaatcatctg...
Basic information
species | Glycine max |
transcript | GLYMA10G34910.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G25710.1 (Arabidopsis thaliana), 5'ss of exon 1
TGCAGCTTCGAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAgtaagtctaattactaactaattcttcccataaattaaccacgtattaaaattatgaaccacgaattagttact----agtttgcatgtataattaatcatctg
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AGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTAAGCTGCGTAGTATATTACCAAACACAACCAAAgtaagtc--gtttataaataaacactcttctcctttcattatggtttgatatt-tcagaaactaattcactattttgaaaaccctatggaaaaatagttttaa-
upper sequence: GLYMA10G34910.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g02940.t01 (Vitis vinifera), 5'ss of exon 2
TGCAGCTTCGAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAgtaagtc-taattactaactaattct--tcccataaattaaccacgtattaaaattatgaaccacgaattagttactagtttgcatgtataattaatcatctg-
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TGCAGCTTCTAAGAGCCACAGTGAGGCTGAGAGGAGAAGAAGAGAGAGAATCAACAACCATCTAGCTAAACTGCGCAGCTTACTGCCCAGCACCACCAAAgtaagtcatgatcatccatcaaccaaaattccttaaa--atccgtatattatcacgccca--caacatgtagattttatataccatacacttttttccctacacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|324575420|gb|JG406871.1|JG406871EST: TCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAA ACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTAAAGGAGCTG
genomic: TCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAgtaagtctaa ... tttttgatagACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTAAAGGAGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGCTTCGAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAgtaagtctaattactaactaattcttcccataaattaaccacgtattaaaattatgaaccacgaattagttactagtttgcatgtataattaatcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttccc