Sequence
atgc intronic sequence ATGC exonic sequenceACAGAGATCCAAAAGCTTTGCTTTTAGGGCACCCCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctcacacatggacttttgttgttttcgttttgtgggttgatattggcttacctttttttcttttgtatgtgtgtgtgtgcaatgttttgatggataat...
Basic information
species | Glycine max |
transcript | GLYMA10G34430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 1
ACAGAGATCCAAAAGCTTTGCTTTTAGGGCACCCCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctcacacatggacttttgttgttttcgttttgtgggttgatattggcttacctttttttc--ttttgtatgtgt-gtgtgtgcaatgttttgatggataat-----------------------------------------------------------------------------
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TTCCAGAAGCAAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACTTACCATGATTTCGAGCTCGGCAAGATCTATGGCGTTGGCTCTTATTCTAAGgtttcattttt---tctattcttttcacattttttttcctgtaaaaatctcatcttttctgcaatttggtttgaatcatgaatcaattcatatcttggagattttttatgggaaatggaaaactttttcattgctctaagttaactttagctggattctgcttatgtgtaattgaatcag
upper sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 1
ACAGAGATCCAAAAGCTTTGCTTTTAGGGCACCCCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctca---cacatggacttttgttgttttcgttttgtgggttgatattggcttacctttttttcttttgtatgtgtgtgtgtgcaatgttttgatggataat----------------------------------
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TTCTAGAAGCAAAAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTTCACCAGCCATGATTTCGAATTTGGCAAGATCTATGGTGTTGGTTCTTACTCTAAGgtttctattttcattactattttctattgtggctttgattcatgaacccagctcgattctctggttgatttttttgttgcaatgtggtgttgatattggaaaggattggtttttgacctgtgggtgattcatattag
upper sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 2
ACAGAGATCCAAAAGCTTTGCTTTTAGGGCACCCCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctcacacatggacttttgttgttttcgttttgtgggttgatattggcttacctttttttcttttgtatgtgtgtgtgtgcaatgttttgatggataat---
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TCAGAGATCTAAGAGCTTTGCGTTTAGGGCTCCCCAGGAGAATTTTACTATTCAGGATTTCGAATTGGGGAAGATCTACGGCGTCGGGTCCTATTCCAAGgtc-caaactttgcgccccgttttaattttcttct--ttttctcctaatctctttttgggcgttttgattatgtgtttttttcccttttcatttgttaccctaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208291228|gb|GE094534.1|GE094534EST: TCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAG GTTGTGAGGGCAAAGAA
genomic: TCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctcacaca ... atgtttaaagGTTGTGAGGGCAAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGAGATCCAAAAGCTTTGCTTTTAGGGCACCCCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctcacacatggacttttgttgttttcgttttgtgggttgatattggcttacctttttttcttttgtatgtgtgtgtgtgcaatgttttgatggataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg