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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcatttcctcagatccgaaccttgctaaccccaatctaatctaatctcacccgcag

Basic information

species Glycine max
transcript GLYMA10G34310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os09g04110.2 (Oryza sativa), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgt-aacaaat--ttaactagatctacatatc----atttcctcagatccgaaccttgctaacccca-atctaatctaatct-cacccgcag---------
|||||||||||||| |||||  |||||   ||||||||||||||||||||||||||||||||||| ||||||  | |||| || |||||||||||||||||| |   |||  || | |    ||| || ||    |||| ||  | ||      ||||    | |   | |  |   |||  |  | | |          
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACCCAGCCGCTCTTCGTCTCCGGAGgtcagtcaatcattcattcctcctagatctcgcccatttgctgtgctcttttatttgcctttcgcgcgtttggttggatccacgtcggtattgagggcgt

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g50340.1 (Oryza sativa), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcatttcctcagatccgaaccttgctaaccccaatctaatctaatctcacccgcag--------------------
|||||||||||||| |||||  |||||   ||||||||||||||||||||||||||||||||||| ||||||  | | || || |||||||||||||||||||| | ||  |       || | ||  || ||  | |   ||| | ||  |     |  | |  |       | | ||| |                    
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACGCAGCCGCTCTTCGTCTCCGGAGgtaa-acatcgattcctccctgcctag-atctcgcccgcctcgagcattttttttttcgctgtggtggttcgccgctcgcggggtcgggtgtggcgtcgacg

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g50350.1 (Oryza sativa), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcattt----cctcagatccgaaccttgcta-----accccaatctaatctaatctcacccgcag---------
|||||||||||||| |||||  |||||   ||||||||||||||||||||||||||||||||||| ||||||  | | || || |||||||||||||||||| |  |      ||||||||   |  |        |  | |    |  | | |          |    |    ||  |||   |||             
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACGCAGCCGCTCTTCGTCTCCGGAGgtgagtagacccgctagatctctctccctcgcggggcggcgggcatgggcttcgtggcgtgttgcttgtttcgctcggatcctgccctggatcggaggac

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G010054_T01 (Zea mays), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcatttcc-tcagatccgaaccttgctaaccccaatctaatctaatctcacccgcag-------------------------
|||||||||||||| |||||  |||||   ||||||||||||||||| || || ||||||||||| ||||||  | | || || ||||||||||||||||||||     ||  |||||||    | ||    || || | | ||  | | ||     |  | || || |  |||| | || |                          
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCGTCCACTTCCACGCCACACAGCCGCTCTTCGTCTCCGGAGgtaa-----tttgctagatccttctgtctcgcccgtctggtgcgctcttcgcgtgttc--agctcatttc-tctcgcgcggattggaggtgttcccgcaagttacgtg

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G149406_T01 (Zea mays), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcatttcctcagatccgaaccttgctaaccccaatctaatctaatctcacccgcag---------------------
|||||||||||||| |||||  |||||   ||||||||||||||||| || || ||||||||||| ||||||  | | || || ||||||||||||||||||||     |  |      || | | ||    | || | | ||  | | || |     |    | |   ||||| |    ||                     
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCGTCCACTTCCACGCCACTCAGCCTCTCTTCGTCTCCGGAGgtaatttgctagatccttcct-cgtgtcgcc-cgtctggtgcgcgcttcgc-atgtttagctcatttatatctcgcggataggaggtattcccgcgagttacg

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: AC155622.2_FGT004 (Zea mays), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatat-catttcctcagatc--------cgaaccttgctaacccca--atctaatctaatctcacccgcag-------
|||||||||||||| |||||  || ||   ||||||||||||||||| |||||| | |||||||| || |||  | | || || |||||||| ||||||||||  |    |       || ||     |  |    | ||||        |  |||| | |   |||     || | || |  ||||| | |        
GACTACCGCATGGGCACCCTCCTCAACCGCTTCGACGAGCACGACGGGCCCGTCAGGGGCGTCCACTTTCACGCCACGCAGCCGCTCTTCGTGTCCGGAGgtactattccttgtcttctccactcgggcgctctaccggatcgtcctcacctcacctggatcgtcccttcgcctcacctcacttcacctggatcgtcggt

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ08647 (Selaginella moellendorffii), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcatttcctcagatccgaaccttgctaaccccaatctaatctaatctcacccgcag
|| ||||| |||||| | || || ||    |||||||||||||||||||| || |||||||| |||||||||  ||| || || || |||||||| ||||||||   |   | |   ||   | |        ||  ||||   |  | | |    |   || |                  
GATTACCGGATGGGATCTCTCATAGATCGCTTCGACGAGCACGACGGCCCGGTTCGCGGCGTTCATTTCCACAGCTCTCAGCCTCTTTTCGTCTCGGGAGgtaaaccacgaaccagcattcgcgt--------ctttgatcaatatttcgattgatcttgtccag-----------------

upper sequence: GLYMA10G34310.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37162 (Selaginella moellendorffii), 5'ss of exon 1
GACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatttaactagatctacatatcatttcctcagatccgaaccttgctaaccccaatctaatctaatctcacccgcag
|| ||||| |||||| | || || ||    ||||||||||||||||| || || |||||| |||||||||||  ||| || || || |||||||| ||||||||   |       | | |  ||| ||   || |  ||||   |  | | |    |   ||||                  
GATTACCGGATGGGATCTCTCATAGATCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCATCCATTTCCACAGCTCTCAGCCTCTTTTCGTCTCGGGAGgtaagccac------aaaccagcat-tcgcgtcttt-gatcgatatttcgattgatcttgtctag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700398|gb|BW664411.1|BW664411
EST:     CGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAG                         GTGACGATTACAAAATCAAGGTGTGGAACTACAAGCTCCACCGCTGCCTCT
genomic: CGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatt ... tcacccgcagGTGACGATTACAAAATCAAGGTGTGGAACTACAAGCTCCACCGCTGCCTCT
EST: gi|193609061|gb|FK561645.1|FK561645
EST:     CGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAG                         GTGACGATTACAAAATCAAGGTGTGGAACTACAAGCTCCACCGCTGCCTCT
genomic: CGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGgtaacaaatt ... tcacccgcagGTGACGATTACAAAATCAAGGTGTGGAACTACAAGCTCCACCGCTGCCTCT