1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCCTTTTCTATCGAGGACTCTTCCTAGACATCGCCACTGCACTATTGCGCCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaactttattgttttcagaatgcatgttcggttttcagcttattgggtctgattgaatttccatcccttttgttttgcttctcag
species | Glycine max |
transcript | GLYMA10G34150.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAA TGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGAEST: gi|21888548|gb|BQ741761.1|BQ741761
genomic: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaact ... tgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
EST: CCACTTCATAGAACTCAACATGCTAGGATTTGTTGTTCTGTTGCCCCAAA TGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGAEST: gi|213589352|gb|DB961685.1|DB961685
genomic: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaact ... tgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
EST: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAA TGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
genomic: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaact ... tgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTTTTCTATCGAGGACTCTTCCTAGACATCGCCACTGCACTATTGCGCCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaactttattgttttcagaatgcatgttcggttttcagcttattgggtctgattgaatttccatcccttttgttttgcttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT