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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTTTTTGCAGCAATGGCTTCTCATTCTGCTGgtaataaatttttaacctaatcattgctgctaaatgcattcttcatcctaacttaacagctctgatttgaattttgaag

Basic information

species Glycine max
transcript GLYMA10G34010.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018810|gb|CX705552.1|CX705552
EST:     CAATTTTTTGCAGCAATGGCTTCTCATTCTGCTG                         CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: CAATTTTTTGCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: gi|298191014|gb|HO038493.1|HO038493
EST:     GCAGCAATGGCTTCTCATTCTGCTG                         CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: GCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: gi|15288312|gb|BI472203.1|BI472203
EST:     CAGCAATGGCTTCTCATTCTGCTG                         CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: CAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: gi|298180389|gb|HO025590.1|HO025590
EST:     GCAGCAATGGCTTCTCATTCTGCTG                         CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: GCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: gi|51337031|gb|CO980897.1|CO980897
EST:     TTTTTTGCAGCAATGGCTTCTCATTCTGCTG                         CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: TTTTTTGCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: gi|298180981|gb|HO022420.1|HO022420
EST:     GCAGCAATGGCTTCTCATTCTGCTG                         CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: GCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT