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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAATAATAATAAAGAAAATTACTTATAGATTTTTGTGATACGCCTGCAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctatctcaattgtaattttttcttccttttcattgatcaatctttgtttttgtgttgtttctgaactcaattatgacattttggaaaatttagc...

Basic information

species Glycine max
transcript GLYMA10G32590.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173249|gb|HO020233.1|HO020233
EST:     GTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: GTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|213615020|gb|DB957058.1|DB957058
EST:     TGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: TGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     CACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|298197177|gb|HO041920.1|HO041920
EST:     GTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTACACTCCTGCACTGGAAGGAATT
genomic: GTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|193553892|gb|FK508681.1|FK508681
EST:     GTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: GTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACCGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|209707561|gb|BW680931.1|BW680931
EST:     GTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: GTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     AGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACCCCTGCACTGGAAGGAATT
genomic: AGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|193417916|gb|FK384308.1|FK384308
EST:     CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|193675524|gb|FK619538.1|FK619538
EST:     CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     GTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: GTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     CAGTTGTTGTTCTCAGTCTAAGAT-TTCGTCGAGGTCTTCCCCATTCAAT                         CAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT
genomic: CAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctat ... ttatgtgcagCAAAGCACAAAAATGGAGGTGACTGTTTTCACTCCTGCACTGGAAGGAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACAATAATAATAAAGAAAATTACTTATAGATTTTTGTGATACGCCTGCAGTTGTTGTTCTCAGTCTAAGATCACCGTCGAGGTCTTCCCCATTCAATgtatgtctatctcaattgtaattttttcttccttttcattgatcaatctttgtttttgtgttgtttctgaactcaattatgacattttggaaaatttagc

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