1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAATCTCAGTGGTAACCACAAAAGTCTTGCCACCTTAATCACAGGTCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAGgttggaacaccccacaccccaccacctattctttacgaggaacactccactgccacacacgcacgcacatagcataattcagacactgactgagatctcg...
species | Glycine max |
transcript | GLYMA10G32470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAG GTTAATCATTAAGTCACTGTATTGTGAGTAAGCTGTTTGTCGTTGTTTCTAEST: gi|193677195|gb|FK614495.1|FK614495
genomic: TCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTAAGTCACTGTATTGTGAGTAAGCTGTTTGTCGTTGTTTCTA
EST: TCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAG GTTAATCATTAAGTCACTGTATTGTGAGTAAGCTGTTTGTCGTTGTTTCTAEST: gi|120533458|gb|EH261591.1|EH261591
genomic: TCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTAAGTCACTGTATTGTGAGTAAGCTGTTTGTCGTTGTTTCTA
EST: TCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAG GTTAATCATTAAGTCACTGTATTGTGAGTAAGCTGTTTGTCGTTGTTTCTA
genomic: TCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTAAGTCACTGTATTGTGAGTAAGCTGTTTGTCGTTGTTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATCTCAGTGGTAACCACAAAAGTCTTGCCACCTTAATCACAGGTCAATTTGCTGTCCACAGCACACTGCTGCAACTCTCGCAAACTCTTTTAGgttggaacaccccacaccccaccacctattctttacgaggaacactccactgccacacacgcacgcacatagcataattcagacactgactgagatctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc