1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGAAGCTTAATCTTCAGACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgtttttctcacttttcttttgtaattgaaagcctttgcatgcttctgttctctagtcttttctttcttgcatcaatagtgtgtttaatttgatt...
species | Glycine max |
transcript | GLYMA10G32340.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|192333623|gb|FK025762.1|FK025762
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|209714039|gb|BW684490.1|BW684490
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|10848303|gb|BF071715.1|BF071715
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|14258563|gb|BG881471.1|BG881471
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|27426769|gb|CA938289.1|CA938289
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|151412790|gb|EV282602.1|EV282602
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|151412567|gb|EV282379.1|EV282379
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|192319926|gb|FK012974.1|FK012974
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|213590336|gb|DB970134.1|DB970134
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|8283335|gb|BE020896.1|BE020896
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|151412486|gb|EV282298.1|EV282298
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATEST: gi|15286249|gb|BI470140.1|BI470140
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
EST: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAA GGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
genomic: GTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgttt ... aaattttcagGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGCTTAATCTTCAGACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAgtaagtgtttttctcacttttcttttgtaattgaaagcctttgcatgcttctgttctctagtcttttctttcttgcatcaatagtgtgtttaatttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA