1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCGAGGAATGGGGTGGTGGAGAAGGTGGCAAATGACAATTCAAGTGAATAATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGgttcttttttctctttcaaattaattaattaattcctcatcgctttttttttaaaaaaattcacaatctaccatcatcatcatcatcatcactcatcctt...
species | Glycine max |
transcript | GLYMA10G31370.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAG ATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGATEST: gi|17023405|gb|BM094439.1|BM094439
genomic: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGgttctttttt ... gttctttcagATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGAT
EST: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAG ATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGATEST: gi|298165142|gb|HO011191.1|HO011191
genomic: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGgttctttttt ... gttctttcagATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGAT
EST: AATGGAGAACAACAACAACAACCACAACCTTATCGTCCCTAATCCTCAAG ATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGAGEST: gi|19270301|gb|BM886557.1|BM886557
genomic: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGgttctttttt ... gttctttcagATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGAT
EST: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAG ATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGAT
genomic: AATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGgttctttttt ... gttctttcagATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGAGGAATGGGGTGGTGGAGAAGGTGGCAAATGACAATTCAAGTGAATAATGGAGAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGgttcttttttctctttcaaattaattaattaattcctcatcgctttttttttaaaaaaattcacaatctaccatcatcatcatcatcatcactcatcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa