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ACTCGAAGAACCTTGAAGCGAGTCTGGGCCACAGCAACCAGCGACAACAACTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaacaactcctcctctgaaatttcatcgcacaccatcatcacgttcttgttgttcctttctcaaccactgaaaccaagtaatatacaaaatgct...
species | Glycine max |
transcript | GLYMA10G30880.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|207817842|gb|GD791847.1|GD791847
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|298187249|gb|HO034398.1|HO034398
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGGCACAGTTAEST: gi|18041120|gb|BM309414.1|BM309414
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|298199179|gb|HO042542.1|HO042542
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|16104776|gb|BI892516.1|BI892516
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|298168497|gb|HO009427.1|HO009427
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|151394304|gb|EV264175.1|EV264175
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|9986743|gb|BE660851.1|BE660851
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|254320847|gb|GR827296.1|GR827296
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|298172122|gb|HO021714.1|HO021714
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGGATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|151394063|gb|EV263934.1|EV263934
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|298164274|gb|HO013919.1|HO013919
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTCGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTAEST: gi|208280479|gb|GE080565.1|GE080565
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
EST: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTG TTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
genomic: CTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaac ... cttgttttagTTCAAGAGAAGATGGTAACTAGAATTGTGGATCTTCGTTCAGACACAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCGAAGAACCTTGAAGCGAGTCTGGGCCACAGCAACCAGCGACAACAACTCAATCAGCTAGGGTTGCTTTGCTTGCTATCTTGTTGGAGGATTTTCTGgtaaattaacaactcctcctctgaaatttcatcgcacaccatcatcacgttcttgttgttcctttctcaaccactgaaaccaagtaatatacaaaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc