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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGTTCTCGGCAAATCGATACGCGACACTGGATCCAACAAAGATATGGTCGTTTTGGTCTCTGATGTTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactcttttcctttgcgaaatgtattaacgcggaaccagaaatgaaattttgtgatcactttatattaaatttaatatcagtgtttcattttatatgaatcctagattttgttagttataacttattattaagtgatactgttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtag

Basic information

species Glycine max
transcript GLYMA10G30700.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30700.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G18480.1 (Arabidopsis thaliana), 5'ss of exon 1
TCGAGTTCTCGGCAAATCGATACGCGACACTGGATCCAACAAAGATATGGTCGTTTTGGTCTCTGATGTTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactcttttcctttgcgaaatgtattaacgcggaaccagaaatgaaattttgtgatcactttatattaaatttaatatcagtgtttcattttatatgaatcctagattttgttagttataacttattattaagtgatactgttgattatagaactcgtggatagggtaaagggttttatgattggtttttttgtag
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TAGGGTATTGGGTAAATCGATTCGTGACACTGGATCCACTAAGGATATGGTCGCTTTGGTTTCTGATGGTGTCTCAGACTACTCTAAGAAGTTACTCAAGgtttggtttttattgtctagttatagtagtttaaagatctaaa--gagttctcctttcgattgagtttgagcttaaatttgat--cacatactgctttgtt--taaagttgtttgcttttgattctatag-------------------------------------------------------------------