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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag

Basic information

species Glycine max
transcript GLYMA10G30400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgtt-agccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag
| ||||| || |||||||| ||||||||||| || |||||||||||||| ||||| || ||||||||| | ||||||||  | || || ||  | |||||||   ||  ||       |  || ||  | |||  | ||  | |  |  ||       | | |  ||||||    | || |        || ||  |||   |  |||  |  | |||
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtccggctctctcttttttttttacatatttttactgttatatctcagcttagc----ctgagcttgttttatccatatcaa-------ttcatttgttacaactaatggtcctacag

upper sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacat---catttcaattatttgtttttggaccaaacattt-----atgat---gcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag--------
| ||||| || || ||||| || |||||||| || |||||||||||||| ||||| || || |||||| | ||||||||  | || || ||  | |||||||       ||   | ||   || |||| ||  ||  |    |   ||  | ||      | ||   || |  ||| |||   | |  |  | |       ||| | | |  || | |||  ||   |        
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 2
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag
| ||||||||||| |||  ||| |||||||| |||||||| || || || |||||||| ||||| |||||||||||||| ||||| || || |||||||||||||  |      |  |  |||   |  |  ||||| | |       |||| | |    |         | | | | |||    | |||| |  | | |                 
GTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACTATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGgttagttag-----attttgttt---tcttcggttttcgca------gtttacggtttcttaa--aacaagttaaaaagattggattttttgtttgctttag---------------

upper sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag
| ||||| || || ||||| || ||| ||||||||||||||||||| || ||||| |||||||||||| |||| ||  |  | || || ||  |    ||||      || |      | || |||||  ||   ||      |  |||||      |  |   |  ||   || || | |      || | |||  |||      | ||| ||   
GCATGGGCTTCATCCAGTCCAATCACGCTGTCATTATGTACAACAATACCATGATCAGCTTCAACATGCTTGAAGCCTCACGCATCAATGGTGTCTCTAGgtgcatgctcctctctgcccttccaatt--ttacctt------agccatttccagctcttta--ttcttgctttcgaaggtctctgcttatgtgcaatctc-----tgtttctct--

upper sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag
| |||||||| |||||||| |||||| | || || |||||||||||||| ||||| ||||| |||||| | ||||| ||  | || || ||| |     |||| || | |   |    |  |||         ||||||   |   |  |   |  ||  ||| | || |  |   |  |  |        |    |    |  ||| ||| |    
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacc---cttgccccttc---------tttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaa----cacacagttaacaatgaatgtttctttg-

upper sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTTATTCAGTCTAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatcatgcacatcatttcaattatttgtttttggaccaaacatttatgatgcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttccag
| ||||| || || |||||||||||| | |||||||||||||||||||| ||||| || ||||||||| | || || ||  | || |||||  |||   |||  ||  ||  |||  |  ||||  ||     ||    |  | |    || | |    ||  |||     |||||  |    | |||||  |   |||  ||     ||       
GTATGGGCTTCATCCAGTCTAACCACGCCGTCATTATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCCGCTCGCATCAACGGTGTTACCCGgtgcgcgctctcgca-gtgctttc--tttgccattaccagttcga----ttttcacttcgtctctgcc---attagtgggaattttgtttcttttattcctaattgcgtt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566810|gb|AW234442.1|AW234442
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
EST: gi|15814341|gb|BI786616.1|BI786616
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
EST: gi|19347182|gb|BM892062.1|BM892062
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
EST: gi|19348759|gb|BM893291.1|BM893291
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
EST: gi|26058273|gb|CA801187.1|CA801187
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
EST: gi|151403142|gb|EV272952.1|EV272952
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
EST: gi|192302446|gb|FG997358.1|FG997358
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTT
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTT
EST: gi|20813404|gb|BQ297882.1|BQ297882
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAACGGCATTAAGAGgttagccatc ... atttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGA