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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTCCAGTAGCCGGCACTAAACAACATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgtttttctcgtttcgtcctctgatcttcgctttatatcatgcattttgattttgtagagttccctctatcgtttcgattctgaaagcaatgtcact...

Basic information

species Glycine max
transcript GLYMA10G30200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 1
-GTTGCTCCAGTAGCCGGCACTAAACAACATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgtttttctcgtttcgtcctctgatcttcgctttatatcatgcattttgattttgtagagttccct---ctatcgtttcgattctgaaagcaatgtcact
   || ||  | |      |    |   ||||||||| || || ||||| ||| | ||||| || || ||||| |||||||||||| |||||||||| |||||  |||    ||  |  || |  |  |     ||     |  | | | ||   | | | || |        |||| |||| |    |  || |||| | |  
GACTGATCTCGGAAAGTAAATCGCA-GCCATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTTCATGACCAACAGGCTTCTCGCCAGAAAGCAATTCgtgagttcccatctctatgttccattttgcaatctcacagtgttacgtcttcgctgtatcgaatgataaaaactatagtttagg---tagaaacaatcttata

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 1
GTTGCTCCAGTAGCCG-GCACTAAACAACATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgtttttctcgtttcgtcctctgatcttcgctttatatcatgcattttgattttgtagagttccctctatcgtt--tcgattctgaaagcaatgtcact--
 |  ||  | |    | | | ||   || ||||| || ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||  |||    |  |||  | ||||  |||   ||  |||||||   ||||| | || | |  ||   | ||  |    || | |   ||    || | |    
-TCACTTTAATCCTTGAGAAGTAGCAAAAATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCgtgagttccattattttttttctcttctctat-ctgcatatcat---ttttgttcttctgggttttgttttaatgggaatctagttataatttgatatgaaccc

upper sequence: GLYMA10G30200.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
GTTGCTCCAGTAGCCGGCACTAAACAACA----TGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgtttttctcgtttcgtcctctgatcttcgctttatatcatgcattttgattttgtagagttccctctatcgtttcgattctgaaagcaatgtcact------
    |  |   ||||| | | || |||||    ||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| ||  | |||||||| ||  ||||   |   ||| |  |  | || | |      |  |   |     ||   | | | ||     |   || |  ||  |  |  |||| | |||      
----CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaa-----atgaaggaaaatttttgttcctgtatttatcttagattcaat-ttactttgttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347217|gb|BM892097.1|BM892097
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|58025196|gb|CX711937.1|CX711937
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|209713547|gb|BW681537.1|BW681537
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|193549430|gb|FK508805.1|FK508805
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|254323029|gb|GR839942.1|GR839942
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|21675969|gb|BQ628320.1|BQ628320
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192306132|gb|FG993694.1|FG993694
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|42722991|gb|CK768890.1|CK768890
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192319861|gb|FK013273.1|FK013273
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192300336|gb|FG991438.1|FG991438
EST:     GAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCCGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: GAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|208201576|gb|GE000896.1|GE000896
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|11690358|gb|BF598034.1|BF598034
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|7796121|gb|AW781518.1|AW781518
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|4293568|gb|AI442066.1|AI442066
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298185347|gb|HO030560.1|HO030560
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|58020774|gb|CX707516.1|CX707516
EST:     CAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: CAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192327529|gb|FK018205.1|FK018205
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192311719|gb|FK003580.1|FK003580
EST:     TCCGAGCCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|38193084|gb|CF922290.1|CF922290
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|12773510|gb|BG238437.1|BG238437
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192295452|gb|FG987066.1|FG987066
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|21595184|gb|BQ610395.1|BQ610395
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298163232|gb|HO011965.1|HO011965
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|254315836|gb|GR825645.1|GR825645
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|151396920|gb|EV266793.1|EV266793
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|8827142|gb|BE210872.1|BE210872
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|7145698|gb|AW507620.1|AW507620
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|10843108|gb|BF066427.1|BF066427
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192325499|gb|FK017225.1|FK017225
EST:     TCCGAACCAGGAAGTTTACGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|209713548|gb|BW681538.1|BW681538
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298168344|gb|HO014519.1|HO014519
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298197015|gb|HO041782.1|HO041782
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298194597|gb|HO043069.1|HO043069
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192298217|gb|FG992052.1|FG992052
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|207766022|gb|GD737315.1|GD737315
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298187696|gb|HO031653.1|HO031653
EST:     TCCGAACCAGGAAGTTTATGAC-AACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|208246271|gb|GE050169.1|GE050169
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|13181016|gb|BG352356.1|BG352356
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAG-TC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298183529|gb|HO028742.1|HO028742
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298177182|gb|HO027077.1|HO027077
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192311720|gb|FK003581.1|FK003581
EST:     TCCGAGCCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298198844|gb|HO042207.1|HO042207
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192313094|gb|FK004684.1|FK004684
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAATTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298173365|gb|HO016701.1|HO016701
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192319534|gb|FK009516.1|FK009516
EST:     TCCGAGCCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298171004|gb|HO016036.1|HO016036
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|6718631|gb|AW306278.1|AW306278
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298179237|gb|HO027708.1|HO027708
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|151393246|gb|EV263121.1|EV263121
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|254315835|gb|GR825644.1|GR825644
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|8285385|gb|BE022944.1|BE022944
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|254323030|gb|GR839943.1|GR839943
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192305683|gb|FG998033.1|FG998033
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGCTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298168639|gb|HO009569.1|HO009569
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298181619|gb|HO025794.1|HO025794
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192322531|gb|FK014652.1|FK014652
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|298165850|gb|HO008821.1|HO008821
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|192313093|gb|FK004683.1|FK004683
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAATTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
EST: gi|26058682|gb|CA801596.1|CA801596
EST:     TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTC                         GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG
genomic: TCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgttttt ... tgtgatgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGCTCCAGTAGCCGGCACTAAACAACATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTTATGACAAACAGGCTTCTCTCCAGAAAGCAGTTCgtacgtttttctcgtttcgtcctctgatcttcgctttatatcatgcattttgattttgtagagttccctctatcgtttcgattctgaaagcaatgtcact

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