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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGAAAATGTGATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATTAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATgtgagttccagggggggggcctaaggctttgaatttggggttattgttttgttttttatttctcttacttctgccaaactttgactggtttttatttccacccctcctttttctgcag

Basic information

species Glycine max
transcript GLYMA10G28490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28490.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 2
CAAAAGAAAATGTGATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATTAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATgtgagttccagggggggggcctaaggctttgaatttggggttattgttttgttttttatttctcttacttctgccaaactttgactggtttttatttccacccctcctttttctgcag
|||| ||||||||| ||||||| ||||| |||||||| |||||| | ||||||||||| |||||||| |||||||||||||||||||| ||||| ||| ||||||||  |     |   | |   | ||   | || |   |  | | || ||| ||  |    | | |||| | | | ||| |||  | |  | ||     | ||            
CAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaaacatcgctccgttgtgtttccgactttgttatgatttcttatttattcctctggtgagttcttctagagtttaact--tctaaacttattttcttcag----------