1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAAAACATGGCGACTGTGGTGCCAACCTCCGAAGAAGACGCTGCACTCTCCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttcttcctccacctcaaacccttctctggcgtttttcttagctctaattgtgaatggttcggttattgtgcttatttgttggtttcggtgtgag...
species | Glycine max |
transcript | GLYMA10G28080.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGTCGTTCGATTCGCCTCCGAACTTGCCTGGGCCGATGCCGGTCCTGAG GTTGCTGAGCCCCAAGTTAGEST: gi|208244592|gb|GE038549.1|GE038549
genomic: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttct ... ggtttgttagGTTGCTGAGCCCCAAGTTAG
EST: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAG GTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATTEST: gi|4260432|gb|AI416928.1|AI416928
genomic: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttct ... ggtttgttagGTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATT
EST: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAG GTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATTEST: gi|208298971|gb|GE093724.1|GE093724
genomic: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttct ... ggtttgttagGTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATT
EST: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAG GTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATTEST: gi|208255810|gb|GE052789.1|GE052789
genomic: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttct ... ggtttgttagGTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATT
EST: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAG GTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGEST: gi|208320093|gb|GE116410.1|GE116410
genomic: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttct ... ggtttgttagGTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGG
EST: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAG GTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATT
genomic: CCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttct ... ggtttgttagGTTGCTGAGCCCCAAGTTAGCAGACTCTGCACGGAGGCTGAAGAGTTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAACATGGCGACTGTGGTGCCAACCTCCGAAGAAGACGCTGCACTCTCCGTCGTTCGATTCGCCTCTGAACTTGCCTGGGCCGATGCCGGTCCTGAGgtagctttcttcctccacctcaaacccttctctggcgtttttcttagctctaattgtgaatggttcggttattgtgcttatttgttggtttcggtgtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc