Sequence
atgc intronic sequence ATGC exonic sequenceGGGTTTAGCGCCACACTCCAATCGTAGCCGTCGCACTCTGTGTTTTCTGCGCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcataccacaatcagccttcaccaattgaaattaaacctcatcaattaataactatgatttcaattttttatcgtgtgtttctgtgtgcgcag
Basic information
species | Glycine max |
transcript | GLYMA10G26890.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 5'ss of exon 1
GGGTTTAGCGCCACACTCCAATCGTAGCCGTCGCACTCTGTGTTT--TCTGCGCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgac-----tcactcattcataccacaatcagccttcaccaattgaaattaaacctcatcaattaataactatgatttcaattttttatcgtgtgtttctgtgtgcgcag
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ACTCCTAACGC-ACTCTCTTCTCCGAATCTAGGGTTTTTGTCTCTAGCCTCCTCAAGCTTTG-CAAACAATCATGGCGACCCAGATCAGCAAGAAGAGAAAGgtgatatcttttgccctcccctgtctctatc--tctctaccaatgtatcgtattctaagcttaacacaaaaaaagttttgaattttgtag---------------------
upper sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 1
-GGGTTTAGCGCCACACTCCAATCGTAGCCGTCGCACTCTGTGTTTTCTGCGCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcataccacaatc-----agccttcaccaattgaaattaaacctcatcaat-taataactatgatttcaattttttatcgtgtgtttctgtgtgcgcag
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CGAGCTTACCGATTCTCTTCG-TCTCAACATTTAGGGTTTCAGAGATCGGCTGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGgtgaattgtgatttcattttttgttttcagtggacttctctagctgtatcgtattggaactgatctggttactgtgtttgtag-----------------------------
upper sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 1
GGGTTTAGCGCCACACTCCAATCGTAGCCGTCGCACTCTGTGTTTTCTGCGCCG-TCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcataccacaatcagccttcaccaattgaaattaaacctcatcaattaa--taactatgatttcaattttttatcgtgtgtttctgtgtgcgcag
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----------------ATTAGGGTTTGCAAAAGCATAGAGAAACCCGAGCTCAGATCTCAAACCTGCAAACATGGCGACTCAAATGAGCAAGAAGAGAAAGgt---ctgatcatatgttcttttattttcctttgttttctgagctaccaatcggaaagttatgtttgttaaagtttcggtaacttattttgttttctcttacag----
upper sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 1
GGGTTTAGCGCCACACTCCAATCGTAGCCG---TCGCACTCTGT--GTTTTCTGCGCCG-TCTCCGATCTC---CGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcataccacaatcagccttcac--caattgaaattaaacctcatcaattaataactatgatttcaatt--ttttatcgtgtgtttctgtgtgcgcag
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---------CACGCCTCTCAATCGCAGGCAGGCTCTTACTCGGTCGGTCGCCTTCTTCGGTCGCCAATTCGACGCTACAATGGCCACCCAAATGAGCAAGAAGCGAAAGgtg-------tgtgtaacccatcatcgctcttttctgcaaatctgataatactaccctgcttggttcacttgctcactgctggttctcccttccctttttctatgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298167771|gb|HO013034.1|HO013034EST: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAAAAGAGAAAG TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
genomic: GCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTTTAGCGCCACACTCCAATCGTAGCCGTCGCACTCTGTGTTTTCTGCGCCGTCTCCGATCTCCGACAATGGCGACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcataccacaatcagccttcaccaattgaaattaaacctcatcaattaataactatgatttcaattttttatcgtgtgtttctgtgtgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA