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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag

Basic information

species Glycine max
transcript GLYMA10G23680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 5
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaat-agctcatgtataaat---ttttttgttcag
 ||||||||||| || |||||||| || || |||||||||||||| ||||||||||| ||||| || |||||| ||||||| ||  | |||||| | |||||   |    | ||| ||   |||   ||     ||  |||  |||| |  | | || | |  ||| |    |||    | ||
GAAAAAGGAAACAGGATATGTTGGTCTAAAGAATCAAGGAGCTACCTGTTATATGAACTCTCTTCTACAAACACTGTACCATATACCATATTTCAGGAAGgt---ctgagatcat-tactttttcctagtctacatgatttgttaagtacctgaacttaagactaattgaaatttcatcttag

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 5
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag
 |||||||| ||||| |||||||| || || |||||||| |||||||| || ||||||||||| ||||| ||  | ||||| ||| | || ||||||||||| |  |   |   | |||| | | | |  |   ||  | | ||  |    |    ||   |   || |||| |     
CAAAAAGGAGACTGGCTATGTTGGCCTTAAGAATCAAGGGGCTACATGCTACATGAATTCTCTTCTTCAGACGCTTTACCATATTCCGTACTTCCGAAAGgtgaggcta-aatttgtaaattctcttaaatga-atcctatgatgcgaggctgatacagagaatgatattttag-----

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 1
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagta-gcatataaactttgtaaggtctt-atttttttataaggaaatagctcatgta-taaatttttttgttcag
|||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || || ||| | ||||| ||  | || ||| | |||||     |  | ||||   || |  |     |||  | | || | |   ||| ||  | |   | |  ||| ||||   |||
AAAAAAAGAAACAGGTTACGTTGGCCTGAAGAACCAAGGAGCTACCTGTTACATGAACTCTCTACTACAGACACTATACCATATACCATACTTCAGGAAGgtgtgagatcatgcatcataattcagagcattctagactattgtttccagaactaattgactaacttcattattttacccag

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag
 |||| |   |||||||||||||| ||||| |||||||| ||||| ||||| ||||| || || ||||| || || ||||||||| |||| || || |||||      | | ||| |  | ||| ||   |  | || |||  ||||      ||| ||    |||||  | | || ||
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtgg---ggcaacatttctattttttat--tactgttgtttcttaagtgtggtgctgatactgaaattaatat-tttag

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 5
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttac-ccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag
 ||||| ||||| |||| ||| || || || |||||||| ||||| ||||||||||||||||| |||||||| || ||||| |   | |||||  ||||||| |   || |      |    | |  | | |  | |       | |      | | ||| |||  |  | |||    ||
GAAAAAAGAAACAGGTTTTGTAGGTCTTAAGAATCAAGGTGCTACCTGTTATATGAATTCTCTCCTTCAAACGTTATACCATACACCATATTTTAGAAAGgtgaaatcaatcattgttctgttctacatgtttctctaagcacctgaattttgaac-catttattgaaatgttttcatag

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 5
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaag---gtcttatt-----tttttataaggaaatagctcatgtataaatttttttgttcag
||| ||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||| || ||||| ||| | ||||| ||| |||| ||| ||||||||    | |    | |   | |  |      || | |||     | |||  ||| ||  |   ||| |   || | | |  |||||
AAAGAAGGAGACTGGTTATGTTGGACTGAAGAACCAAGGAGCTACCTGTTACATGAATTCCCTTCTTCAGACACTCTACCATATTCCTTACTTCAGAAAGgttgggaaattctcttttttcctcctttacttgtttcattgatattatttgcaagaaagcactacatttg-gaactgtgtatttcag

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgtta----cccagtagcatataaactttg--taaggtcttatttttttataaggaaat-agctcatgta----taaattttttt---gttcag-------
 || |||||||| || | ||||||  | || ||||||||||||||||| || ||||||||||| || || |||||||| ||  |  |||| ||||| |||||||    ||    |  | | |||   ||  |  |||   |   |||| | || || | || |   | |       ||| | ||   ||||||       
GAAGAAGGAAACAGGATTTGTTGGGTTAAAGAATCAAGGAGCTACATGCTACATGAATTCTCTCCTCCAGACATTGTATCATCTGCCTTACTTCCGGAAGgttattttcctgtcaatacagaaatcatggttgtggttagaaccttttttcagcaactcagtttcaggagtctcggattctctttcggttcagtacttta

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgtta----cccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag-------------------
 || || || || |||||||||||| |||| ||||||||||| ||||| || ||||||||||| || || || ||||| ||| |  | || || || |||||||    ||    | || | |   ||| | |  |   ||| |   ||   |    |  |||     |      | | | |||                   
GAAGAAAGAGACAGGTTATGTTGGATTGAAGAATCAAGGAGCGACATGCTACATGAATTCTCTCCTCCAGACGTTGTATCACCTGCCCTACTTTCGGAAGgttatttccctgccatcacagatcatttctgaa-ttacattctgcaattcagtg-caattcagtgccaggaggctctatccagttttcggtttattgtgtct

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ14291 (Selaginella moellendorffii), 5'ss of exon 3
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag
||| || || || || | ||| || |||||||| ||||||||||| ||||| |||||||||||  | || ||| |||| ||| |  | | |||||||||||| |||       || |  | |||       |||  ||||||   ||  | | |     | |                 
AAAGAAAGAGACGGGATTTGTAGGTCTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTTTTACAGACACTGTATCACCTGCCATTTTTCCGAAAGgtaacc-------atctcgatttt-------cttgctttttttacagttattcgtgttggcag----------------

upper sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ18164 (Selaginella moellendorffii), 5'ss of exon 3
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag
||| || || || || | ||| || |||||||| ||||||||||| ||||| |||||||||||  | || ||| |||| ||| |  | | |||||||||||| |||   | |   ||   |||  |    |   | || ||  |   |  |                            
AAAGAAAGAGACGGGATTTGTAGGTCTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTTTTACAGACACTGTATCACCTGCCATTTTTCCGAAAGgtaaccatctcg---attttcttgcttgttttacagttattcgtgttggcag---------------------------