1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCCACTCCTCAACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgtaccctttttgattctttcgattttgatctctgtacttcttctctgtgcgtttgctttgcttgatcgtatatcatcaccaaggcggaatttg...
species | Glycine max |
transcript | GLYMA10G18310.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|15001120|gb|BI321934.1|BI321934
genomic: ATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: CGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|151405165|gb|EV274979.1|EV274979
genomic: CGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACGCTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|19269376|gb|BM885632.1|BM885632
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|192333375|gb|FK024352.1|FK024352
genomic: AAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|5760252|gb|AI965615.1|AI965615
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: GATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|8403230|gb|BE058864.1|BE058864
genomic: GATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: GCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|37995518|gb|CF807107.1|CF807107
genomic: GCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: ACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|33387783|gb|CA850990.1|CA850990
genomic: ACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|298198640|gb|HO040179.1|HO040179
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAGGGATCTGEST: gi|120493582|gb|EH221749.1|EH221749
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: TCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|7590752|gb|AW706424.1|AW706424
genomic: TCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: CCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|24136559|gb|BU927069.1|BU927069
genomic: CCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: GCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|209697761|gb|BW663913.1|BW663913
genomic: GCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|192313043|gb|FK004661.1|FK004661
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AGCGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|192333374|gb|FK024351.1|FK024351
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|209697762|gb|BW663914.1|BW663914
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: TCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|19453541|gb|BM954951.1|BM954951
genomic: TCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: GCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|192313044|gb|FK004662.1|FK004662
genomic: GCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AGCGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|192322601|gb|FK014722.1|FK014722
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTGEST: gi|33387822|gb|CA851029.1|CA851029
genomic: AACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
EST: ACGCTTTCTCATNCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAG GTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
genomic: ACGCTTTCTCAT-CGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgta ... ttaaatttagGTACACTTAACGATGGCTTCAAAACGCATTACTAAGGAGTTGAAGGATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCACTCCTCAACGCTTTCTCATCGCTGATCAAACTTCAAACCCTAGCTAGGATTTCAAGgtatgtcgtaccctttttgattctttcgattttgatctctgtacttcttctctgtgcgtttgctttgcttgatcgtatatcatcaccaaggcggaatttg
- - - - - - - - - - - - GCTGAT