1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATTCTCGAATCCGAGTAGTGTTGCGTCTCTGTATCTATCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctctctttctctctctaatcgaatccctcacacaaaaacacataacaaacttctccattattttctttcggcaaatgttagtttgttatgatg...
species | Glycine max |
transcript | GLYMA10G16090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|209696602|gb|BW666924.1|BW666924
genomic: CCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|298198687|gb|HO042050.1|HO042050
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|254348331|gb|GR852010.1|GR852010
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|7926189|gb|AW832215.1|AW832215
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: CCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|254316955|gb|GR828492.1|GR828492
genomic: CCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: CTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|209697044|gb|BW667034.1|BW667034
genomic: CTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|298167046|gb|HO010485.1|HO010485
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|298178685|gb|HO024420.1|HO024420
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|6666245|gb|AW277704.1|AW277704
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|13240397|gb|BG359706.1|BG359706
genomic: TTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCA-CACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|209703907|gb|BW661597.1|BW661597
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|7284217|gb|AW596813.1|AW596813
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|19452506|gb|BM953916.1|BM953916
genomic: TTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: CAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCNGCGGATGGCGCEST: gi|7684739|gb|AW755387.1|AW755387
genomic: CAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCC-GCGGATGGCGC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|209721328|gb|BW665794.1|BW665794
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|15204029|gb|BI426797.1|BI426797
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: CTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCCEST: gi|298181436|gb|HO022875.1|HO022875
genomic: CTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
EST: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAG AAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
genomic: TCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctc ... ttcgctgcagAAGAAGAAGAAGAGTGATGGCTGAGTACGACCTAACTCCGCGGATGGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCTCGAATCCGAGTAGTGTTGCGTCTCTGTATCTATCTTCTCTCGGAGCCGCTATTATCCCCAGACGCCACCGCCGCAGCACCAGgtgctctctctctttctctctctaatcgaatccctcacacaaaaacacataacaaacttctccattattttctttcggcaaatgttagtttgttatgatg
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