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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGGGGAAGAAGAAGAAGAGAAGTAGGGTTTCCGAAGACGAGGAAATCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaatccttcgattgcgtttccattcaattttaatttgtatccgcttttagaaattatctatgtcgaaagtcataccccgttaccaaatcgcat...

Basic information

species Glycine max
transcript GLYMA10G12350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412912|gb|EV282724.1|EV282724
EST:     CCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: CCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|151396151|gb|EV266028.1|EV266028
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|193486269|gb|FK449543.1|FK449543
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|41145363|gb|CK605574.1|CK605574
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|208257299|gb|GE056714.1|GE056714
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAG
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAG
EST: gi|298194691|gb|HO043163.1|HO043163
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|192323158|gb|FK017384.1|FK017384
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|151402844|gb|EV272657.1|EV272657
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|151407863|gb|EV277678.1|EV277678
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCCCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|193579583|gb|FK536352.1|FK536352
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|207703247|gb|GD685305.1|GD685305
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
EST: gi|207729869|gb|GD706421.1|GD706421
EST:     TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAG                         GTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC
genomic: TCGAATCCGATACCAACCCCTTCGATAAAAACGAAAACTCTCTCTATCAGgttatcttaa ... ttgctcttagGTTCTTGGTGTGGAGAAAACAGCATCTCAACAGGAAATAAAGAAGGCATAC