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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGTTTTTACCAGAGAGATGGGTATACTTTTGATGTGGGGTCCTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattcaattttggtgcatgtgattctttttctgttatcatttactttaatttcatttcattagtgatgtgatgagatatggatggtgttg...

Basic information

species Glycine max
transcript GLYMA10G10990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGTTTTTACCAGAGAGATGGGTATACTTTTGATGTGGGGTCCTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattcaattttgg---tgcatgtgattctttttctgttatcatttactttaatttcatt--tcattag-tgatgtgatga------gatatggatggtgttg
 ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| || || |||||||||||||||||||| ||||||||  |||  ||  |||  ||  |   | || | ||         |  ||  |    |  || |||  ||  || || | | | || || |       || || | ||    |
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag

upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGTTTTTACCAGAGAGATGGGTATACTTTTGATGTGGGGTCCTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattcaattttggtgcatgt-gattctttttctgttatcatttactttaatttcatttcattagtgatgtgatgagatatggatggtgttg-
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||||||| | | |       ||| |  | | | | || |  |   ||||   | |||   | |    |     | |||   | | |   |||     ||   ||| 
GGAGAAGTATGTGATTCCTGGTGGGAGCTCTGGGTTCTACCAGAGAGATGGGTATACGTTTGATGTTGGGTCTTCTGTGATGTTTGGTTTCAGCGATAAGgtcggctttaataattattatattccttcttgaattatacactgt--ccttttgtatcagcaactaaaaactaggagtttaagatgatcatattgaaattga

upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ24009 (Selaginella moellendorffii), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGTTTTTACCAGAGAGATGGGTATACTTTTGATGTGGGGTCCTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattcaattttggtgcatgtgattctttttctgttatcatttactttaatttcatttcattagtgatgtgatgagatatggatggtgttg
 |||||||| |||||||||||||||||  |||| |||| | || ||||||| || ||||| ||||| || || || ||||||||||||||||| || ||||  |||        |||  || || | || ||  | ||  |   | |  |||  | |   | |||                                   
AGAGAAGTACGTGATTCCTGGTGGAAGTGCTGGGTTTTTCAAGCGAGATGGCTACACTTTCGATGTTGGATCGTCCGTCATGTTTGGTTTCAGCGACAAGgcaagt-----ggacaaagtttgttcttgagaagcgttc-caactcttttttgttcttgctccatccag-------------------------------

upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ21638 (Selaginella moellendorffii), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGTTTTTACCAGAGAGATGGGTATACTTTTGATGTGGGGTCCTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattcaattttggtgcatgtgattctttttctgttatcatttactttaatttcatttcattagtgatgtgatgagatatggatggtgttg
 |||||||| |||||||||||||||||  |||| |||| | || ||||||| || ||||| ||||| || || || ||||||||||||||||| || ||||  |||        |||  || || | || ||    ||  |   | |  |||  | |   | |||                                   
AGAGAAGTACGTGATTCCTGGTGGAAGTGCTGGGTTTTTCAAGCGAGATGGCTACACTTTCGATGTTGGATCGTCCGTCATGTTTGGTTTCAGCGACAAGgcaagt-----ggacaaagtttgttcttgagaagagttc-caactcttttttgttcttgctccatccag-------------------------------