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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAACCTTCACCGTCTCAGCTTAGGGTTTTACCGTTAAACGATTCTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctcttcaacttcgatttcgcactcttttggttcaacattcttaacattttttttttggttcttatgttgttgtcttctgttgtgtaattgcag

Basic information

species Glycine max
transcript GLYMA10G10000.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9987770|gb|BE661878.1|BE661878
EST:     CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGNCACCATG                         CCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
genomic: CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
EST: gi|15813808|gb|BI786083.1|BI786083
EST:     TCGTCGTCACCATG                         CCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTC
genomic: TCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
EST: gi|14205367|gb|BG839045.1|BG839045
EST:     CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATG                         CCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
genomic: CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
EST: gi|151397650|gb|EV267523.1|EV267523
EST:     CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATG                         CCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
genomic: CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
EST: gi|151408011|gb|EV277826.1|EV277826
EST:     GTTCTGAAACCACTCCCGCCTCGTCGTCACCATG                         CCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTC
genomic: GTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
EST: gi|298177257|gb|HO023504.1|HO023504
EST:     CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATG                         CCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
genomic: CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTT
EST: gi|14206051|gb|BG839729.1|BG839729
EST:     CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATG                         CCGCAAGGGGATTACATAGNAGCGTCACAGAAGAGACTATGGCTACCGTCT
genomic: CTCTTCGTCTTTCTCTGTTCTGAAACCACTACCGTTTCGTCGTCACCATGgttcgctctt ... gtaattgcagCCGCAAGGGGATTACATAG-AGCGTCACAGAAGAGACTATGGCTACCGTCT