Sequence
atgc intronic sequence ATGC exonic sequenceAATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttcttctctctctctctctctctcttaagccttttgtttcgatctcccccccccccccctaattcgttgttttaggtttattcttgaaatgtttt...
Basic information
species | Glycine max |
transcript | GLYMA10G07430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G07430.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
AATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttc-------ttctctctctctctctctctcttaagccttttgtttcgatctcc-cccccccccccctaattcgttgttttaggtttattcttgaaatgtttt
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CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg--------
upper sequence: GLYMA10G07430.2 (Glycine max), 5'ss of exon 1
lower sequence: AT3G53030.1 (Arabidopsis thaliana), 5'ss of exon 1
AATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttcttctctctctctctctctctcttaagccttttgtttcgatctcc---cccccccccccctaattcgttgttttaggtttattcttgaaatgtttt--------
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GATCGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTTCTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTgtacgcatctatctctctctctcgc-cacacgaattgcttgaaatgctttagagattaatttttcgttgctttgtttgtgtgattttcttactcgtatatcgaatgtacag
upper sequence: GLYMA10G07430.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g04220.t01 (Vitis vinifera), 5'ss of exon 1
AATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttcttctctctctctctctctctcttaagccttttgtt--tcgatctcccccccccccccctaattcgttgttttaggtttatt--cttgaaatgtttt
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AATCGGCGACACCTTCAAGAACGGTCGGTACATCGTTCAAACCAAGCTCGGATGGGGCCATTTCTCAACTGTCTGGCTTGCTTGGGACACCTTAAACTCCgtacgcctcccgccatttctctctttgtgtgtattttacggatgacaaataattattattttctatgaatgttgtgattgggagtgattaatttttaaca----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254344738|gb|GR851328.1|GR851328EST: GCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCT AGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCACTACACTGAGGCA
genomic: GCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttctt ... agatctgcagAGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCACTACACTGAGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttcttctctctctctctctctctcttaagccttttgtttcgatctcccccccccccccctaattcgttgttttaggtttattcttgaaatgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc