1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCTTCAAGATCTTGCTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGgtatttcattgctgcttccaaaaaattgttctttctctctcatgcttgttactaaaaatgttttttggactaaaccatgaaaagaatattatttttttaa...
species | Glycine max |
transcript | GLYMA10G06780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTG GTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAACEST: gi|298191339|gb|HO038818.1|HO038818
genomic: CCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGgtatttcatt ... tgttatgtagGTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAAC
EST: CCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTG GTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAACEST: gi|13311878|gb|BG405529.1|BG405529
genomic: CCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGgtatttcatt ... tgttatgtagGTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAAC
EST: CCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTG GTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAAC
genomic: CCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGgtatttcatt ... tgttatgtagGTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCAAGATCTTGCTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGgtatttcattgctgcttccaaaaaattgttctttctctctcatgcttgttactaaaaatgttttttggactaaaccatgaaaagaatattatttttttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagaa