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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGTCGTGTCCCTTCATTTCCAACACGCACCCCGTGGCACTTCAAGCCTCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtcactacccctcttttttctttttaatgctgcagtcgtagaattgaaactcaaagtctcaaactttgtag

Basic information

species Glycine max
transcript GLYMA10G06430.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168689|gb|HO009619.1|HO009619
EST:     TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG                         GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGCTGC
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: gi|151409822|gb|EV279630.1|EV279630
EST:     TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG                         GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: gi|298187545|gb|HO034694.1|HO034694
EST:     TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTTTTATTCGGAG                         GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: gi|14126593|gb|BG791031.1|BG791031
EST:     TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG                         GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
EST: gi|151402284|gb|EV272097.1|EV272097
EST:     TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAG                         GAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC
genomic: TCTTCATTTTGCTCTCTCTGGGGCACTCTCACTTGGGTTATTATTCGGAGgtaattgtca ... aactttgtagGAATTGGCGTGGCTGAGGCTGCAAAAGTTGGTGTGAACAAGCCAGAGTTGC