Sequence
atgc intronic sequence ATGC exonic sequenceAGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGgtaacatcatatttattattcttaatgcctttgaactagcataatacattatatatctttatgacatgaggatatgtatttatgttcttttatatgttct...
Basic information
species | Glycine max |
transcript | GLYMA10G06080.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G06080.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S279_9V6.1 (Physcomitrella patens), 5'ss of exon 5
AGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGgt-aacatcatatttat-tattc-------ttaatgcctt--tgaactagcataatacattat-----atatctttatgacatgaggata-tgtatttatgttctt--ttatatgttct-----------
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TGAAGACTCCTCGAGGATAAGCTGGTTTATGGGAACTATTGCTGCTGTTCAAGCAGCAGATCCAGTACTTTGGCCTAGTTCTCCATGGCGGGTTCTGCAGgttagctttttgtttgtctaatcaaagcaatcaatgtgctaatgaacgtgctgcctgcattgtctgcaatgactatgtactgcgtagtcagtggaaataggtggttgattatgagattttggttgtgcag
upper sequence: GLYMA10G06080.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ29537 (Selaginella moellendorffii), 5'ss of exon 2
AGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGgtaacatcatatttattattcttaatgcctttgaactagcataatacattatatatctttatgacatgaggatatgtatttatgttcttttatatgttct
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CGAAGACTCGTCACGAATCAGTTGGTTTATGGGAACCATATCTGCTGTGCAGCCCGCTGATCCCATTCGCTGGCCGTCTTCTCCATGGCGTATACTGCAGgtaa------gcttactagcacttatcctttcgatatatt-tacgatattactgttctttacag------------------------------------
upper sequence: GLYMA10G06080.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ38760 (Selaginella moellendorffii), 5'ss of exon 1
AGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGgtaacatcatatttattattcttaatgcctttgaactagcataatacattatatatctttatgacatgaggatatgtatttatgttcttttatatgttct
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CGAAGACTCGTCACGAATCAGTTGGTTTATGGGAACCATATCTGCTGTGCAGCCCGCTGATCCCATTCGCTGGCCGTCTTCTCCATGGCGTATACTGCAGgtaa------gcttactagcgcttatcctttcgatata-cttacgatattactgttctttacag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13481393|gb|BG510736.1|BG510736EST: AGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAG GTTACATGGGATGAACCGGATTTACTTCAAAACGTGAGAAGGGTGAGCCCG
genomic: AGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGgtaacatcat ... atatttatagGTTACATGGGATGAACCGGATTTACTTCAAAACGTGAGAAGGGTGAGCCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGgtaacatcatatttattattcttaatgcctttgaactagcataatacattatatatctttatgacatgaggatatgtatttatgttcttttatatgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG