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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAACAGTTCGCTATCGCTGGGACAGTTTTTGTTTGACACCACTCGGAAATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcatttctcttcttctctttcagatctattatgcatgctattccattccaattccacgccgtttcttgcgttccttttcactcatttctctgcttt...

Basic information

species Glycine max
transcript GLYMA10G06010.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697418|gb|BW675563.1|BW675563
EST:     AATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|209706506|gb|BW676080.1|BW676080
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192294406|gb|FG987335.1|FG987335
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|7042134|gb|AW472028.1|AW472028
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|151395376|gb|EV265247.1|EV265247
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192308452|gb|FK002824.1|FK002824
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|15285912|gb|BI469803.1|BI469803
EST:     CTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: CTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192327388|gb|FK018150.1|FK018150
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192325567|gb|FK019423.1|FK019423
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|58024531|gb|CX711272.1|CX711272
EST:     ATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: ATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|209697417|gb|BW675562.1|BW675562
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192311487|gb|FK005218.1|FK005218
EST:     TTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: TTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|120531416|gb|EH259549.1|EH259549
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|207848740|gb|GD818015.1|GD818015
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192328300|gb|FK020011.1|FK020011
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192314767|gb|FK006665.1|FK006665
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|12688293|gb|BG154629.1|BG154629
EST:     TGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: TGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|19938094|gb|BQ081557.1|BQ081557
EST:     CTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: CTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|192325874|gb|FK016551.1|FK016551
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|22540338|gb|BU090181.1|BU090181
EST:     GTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: GTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|193500498|gb|FK464043.1|FK464043
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|31460442|gb|CD402410.1|CD402410
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACTACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|120492606|gb|EH220773.1|EH220773
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|151401027|gb|EV270841.1|EV270841
EST:     CTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: CTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
EST: gi|207842909|gb|GD815503.1|GD815503
EST:     AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA
genomic: AATTTCTCTGCGTCTCTCCTATTTTTTCTGAATCTAACATTAACAACAAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGCTGTTGGCTGCTGA