1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGTTCTGGGAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTgtgagtccacttccttctttcccttctatgtttgtttgaggttcttaccgccaaattgagtattttatttttaattatctccgtttctctgcctttttct...
species | Glycine max |
transcript | GLYMA10G05560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACT ATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTEST: gi|7589789|gb|AW705556.1|AW705556
genomic: GAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTgtgagtccac ... gtttattcagATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGT
EST: TAAGTTTCTCGAAGCTCTCCAACT ATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTEST: gi|11688757|gb|BF596433.1|BF596433
genomic: TAAGTTTCTCGAAGCTCTCCAACTgtgagtccac ... gtttattcagATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGT
EST: GAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACT ATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTEST: gi|9205170|gb|BE331394.1|BE331394
genomic: GAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTgtgagtccac ... gtttattcagATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGT
EST: GAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACT ATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGT
genomic: GAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTgtgagtccac ... gtttattcagATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTTCTGGGAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAACATGATAAGTTTCTCGAAGCTCTCCAACTgtgagtccacttccttctttcccttctatgtttgtttgaggttcttaccgccaaattgagtattttatttttaattatctccgtttctctgcctttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc