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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttcttatccgtttataatggaattatttatttgtttggttaggtctggacactgaccttttaacaactactgtttgcattgtcaaattttatgtt...

Basic information

species Glycine max
transcript GLYMA10G05520.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05520.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g17570.1 (Oryza sativa), 5'ss of exon 4
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgt---tagttcttatccgtttataatggaattatttatttgtttggttaggtctggacactgaccttttaacaactactgtttgcattgtcaaattttatgtt
|||||  | | | | |   | || | ||||||||| ||||||| |||||||||||||||||| || ||||  ||||||||||| || ||| |||||||||||    | | |  ||     ||  |    ||| || ||  ||||   ||  |   ||           | ||   || || |  |||  ||  |||  |    
AGGTTCCTCCCTGTGAAGACACTGAGGGTCTTGCTGGTGGAGAATGATGACTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgcactgcaaattgcaataccaatttattgttaataagtttttctattttccgagggaagttaaattactttta-tgatcacatattcgtattggaga--

upper sequence: GLYMA10G05520.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 5
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttct-tatccgtttataatggaattatttatttgtttggttaggtctggacactgaccttttaacaac-tactgtttgcattgtcaaattttatgtt
|||||  | | | | |   | || |  |||||||| ||||||| |||||||||||| ||||| || |||| ||| ||||| || || ||  | |||||||||  |  ||  |   | | |   |    | ||||  || ||   |    ||        || ||   | ||   ||   |  | |    | ||||| ||   
AGGTTCCTACCTGTGAAGACACTGAGAGTCTTGCTGGTGGAGAATGATGACTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctgcaaatggtaaagctaatttgatttgatttttctctcgcatcaaacaggagagctgcaatcattatatactaagaagaaactaatttgatt--

upper sequence: GLYMA10G05520.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G02810.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGATTGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttcttatccgtttataatggaatt---atttatt-----tgtttggttaggtctggacactgaccttttaacaactactgtttgcattgtcaaattttatgtt
|||||| | ||| | ||| || |||  ||  ||||||| || | ||| ||||  || ||| || | || |||||||| |||||||||||||| ||||||||| |||| | |   |  |||     || |   || |||      | | ||     || | |   |||    || |   | || | ||  |  |||||           
AGGTTTCTTCATGTGAGAACCATTAGAGTTCTGCTTGTCGAAAATGACGACTGCACTCGTTATATCGTTACTGCACTTCTTCGCAATTGTAGCTATGAAGgtcagttttgaa--gcctatggcccaactttaatctatagcgcatatatgtacccgtttcggttctgtttgttgattgattattattaactctgtcatggcag-----