Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGTCTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAGgtaaactaatacttctcttcttctttctaacgcattttttttgttagatttcaaatgggttctgcttcaaatgctaaaagcctttttttgtttttgtttt...
Basic information
species | Glycine max |
transcript | GLYMA10G02720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g22580.1 (Oryza sativa), 5'ss of exon 1
TCCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGTCTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAGgtaa--actaatacttctcttcttctttctaacgcattttttttgttagatttcaaatgggttctgcttcaaatgctaaaagcctttttttgtttttgtttt-----------------------------
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TCCGGCACGTCGCTCACGTCACCTTCGACCGCCTCAACGGCTTCCTCGGCCTCCCCGCCGAGTTCGAGCTCGAGATCCCGGGCCACGTCCCCAGCGCCAGgtcagtactagtatacgttgtatgcctgccctgccgcgcgcgctggcgaaatctaagcctgcaatgattcctccggttaatgtctctcggcgttggatttaccggttaatgttcttcttgattccgtgcag
upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g34840.1 (Oryza sativa), 5'ss of exon 1
TCCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGTCTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAGgtaaactaatacttctcttcttctttctaacgc---attttttttgttagatttcaaatgggttctgcttcaaatgctaaaagcctttttttgtttttgtttt
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TGCGCCACGTGGCGCACGTCACCTTCGACCGCTTCCATGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGTCGAGATGCCATGCCGCGTCCCCAGCGCTAGgtaaaccaaatcccccacccaccattacatctcctgatctccatggttgagttccaagcttctcct-tttgaatcccttggggatttctcagcaaactgca--
upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G323936_T02 (Zea mays), 5'ss of exon 1
TCCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGTCTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAGgtaaactaata-cttctcttcttctttctaacgcattt---tttttgttagatttcaaatgggttctgcttcaaatgctaaaagcctttttttgtttttgtttt
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TCCGCCACGTCGCCCACGTCACCTTCGACCGCTTCCACGGCTTCCTCGGCCTCCCCGTCGAGTTCGAGGATGAGATGCCCTGCCGCGTGCCCAGCGCCAGgtgagcaaccgtccccaccacctccttgtctccctcccgcgtcaccgtaagattcaaaatcgaagcttccgtaga----aaatttcgcttacggggcaagagtcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24136330|gb|BU926840.1|BU926840EST: CTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAG TGTAAGTGTGTTTGGTGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCC
genomic: CTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAGgtaaactaat ... atgcttgcagTGTAAGTGTGTTTGGTGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGTCTTCCCTATGAGTTCCAAGTCGAGATCCCTGCCAGGGTCCCCAGTGCTAGgtaaactaatacttctcttcttctttctaacgcattttttttgttagatttcaaatgggttctgcttcaaatgctaaaagcctttttttgtttttgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC