Sequence
atgc intronic sequence ATGC exonic sequenceACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtcaactttcactatgcccctttttttattattatttatttactctttcggcaccataagtttatgcttgaaggcttaacctaatatatatgtata...
Basic information
species | Glycine max |
transcript | GLYMA09G41450.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G41450.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
ACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtcaactttcactatgcccctttttttattattatttatttactctttcggcaccataagtttatgcttgaaggcttaacctaatatatatgtata--
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CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttact-catctccatgtccatgagctagcttttattatta-accatttcatgcttattttctggattatcgctttcttttaacttatagc
upper sequence: GLYMA09G41450.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00980.t01 (Vitis vinifera), 5'ss of exon 1
ACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtca--actttcac-tatgcccctttttttattattattta--tttactctttcggcaccataagtttatgcttgaaggcttaacctaatatatatgtata
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CCTTTCAATAATCAAATCTGCAGTGAACTCTGCAGTGAAGAGTGAAGCTCGCATGGGGGCGTCCCTGCTCCGTCTTCATTTCCACGACTGCTTTGTTAATgcaagtcaccacttcctcatatatctccattttcatgagcctttaatcttaaccattttataatattctgcatggctttatacttttacctcatgcttgt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192316239|gb|FK010100.1|FK010100EST: GCATGGGAGCCTCCTTGCTCCGTCTTCATCTCCATGATTGCTTTGTTCAA GGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAG
genomic: GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtcaac ... tccatgccagGGTTGTGATGCATCAGTACTATTGGATGATACATCGAGTTTCACAGGTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtcaactttcactatgcccctttttttattattatttatttactctttcggcaccataagtttatgcttgaaggcttaacctaatatatatgtata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttt