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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCAACCATTAAGAGTGCAGTGGATTCTGCTGTGAGCAATGAGGCTCGCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaacttacccagcttcatcaatcttctttcattacttcaaatttcatgttcatcgtgcatctgcacacacacatgcatacatgtttatcacgaa...

Basic information

species Glycine max
transcript GLYMA09G41440.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41440.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
GCTTTCAACCATTAAGAGTGCAGTGGATTCTGCTGTGAGCAATGAGGCTCGCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaactt--acccagcttcatc------aatcttctttcattacttcaaatttcatgttcatcgtgcatctgcacacacacatgcatacatgtttatcacgaa
 ||||||| ||| ||   ||||||| |  | || |||| |||||||||||||||||| || ||||| || |||||||||||||||||||| |||||| | |||||||| |||  || || || |||       |     |||| |||| |    |||||||| | ||  |    ||| |    | | | | |  |   ||||  |   
CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttactcatctccatgtccatgagctagcttttattattaaccatttcatgcttatttt----ctggattatcgctttctttta-acttatagc---

upper sequence: GLYMA09G41440.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00980.t01 (Vitis vinifera), 5'ss of exon 1
GCTTTCAACCATTAAGAGTGCAGTGGATTCTGCTGTGAGCAATGAGGCTCGCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtca--acttacccagcttcatcaatcttctt---tcattacttcaaa---tttcatgttcatcgtgcatctgcacacacacatgcatacatgtttatcacgaa
 |||||||  || ||   ||||||| | ||||| ||||  | ||| |||||||||||||| ||||| || |||||||||||||| || || |||||| | ||||||||  |||| | ||  |   || || ||| |    | ||| |   ||   ||| ||  | ||  |||||      | ||   | | | |||| || |      
CCTTTCAATAATCAAATCTGCAGTGAACTCTGCAGTGAAGAGTGAAGCTCGCATGGGGGCGTCCCTGCTCCGTCTTCATTTCCACGACTGCTTTGTTAATgcaagtcaccacttcctcatatatctccattttcatgagcctttaatcttaaccattttataat-attctgcatggctttatacttttacct-catgcttgt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19936730|gb|BQ080991.1|BQ080991
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|192295821|gb|FG990873.1|FG990873
EST:     GCATGGGGGCTTCCCTCCTACGCCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|15199262|gb|BI423742.1|BI423742
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|151411350|gb|EV281161.1|EV281161
EST:     GCATGGGGGCTTCCCCCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|192311047|gb|FK004736.1|FK004736
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|16346302|gb|BI971897.1|BI971897
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|192326883|gb|FK019190.1|FK019190
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|192311048|gb|FK004737.1|FK004737
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
EST: gi|19935574|gb|BQ080496.1|BQ080496
EST:     GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAA                         GGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA
genomic: GCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaac ... ttaatttcagGGATGTGATGCATCAGTGCTATTGAATGATACATCAAGTTTCACAGGTGAA