1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCGACGAATCAAAACCACAAAAAAGTTTCGATTTTTACCCATTTCGCTGCCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAGgttcgttcagttttcttccttcgctttcgattcgtgtaatgtcaccgttttctgattctaatttgcttcggaatttcattttctgctgttgttttttcta...
species | Glycine max |
transcript | GLYMA09G41160.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAG ACATAAAGAGTTCTCTACAACAACCAAGTTCTGTACAAAGGAAGGATGGGGEST: gi|209719148|gb|BW662765.1|BW662765
genomic: CCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAGgttcgttcag ... gtttttgcagACATAAAGAGTTCTCTACAACAACCAAGTTCTGTACAAAGGAAGGATGGGG
EST: CCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAG ACATAAAGAGTTCTCTACAACAACCAAGTTCTGTACAAAGGAAGGATGGGGEST: gi|209704414|gb|BW680597.1|BW680597
genomic: CCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAGgttcgttcag ... gtttttgcagACATAAAGAGTTCTCTACAACAACCAAGTTCTGTACAAAGGAAGGATGGGG
EST: CCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAG ACATAAAGAGTTCTCTACAACAACCAAGTTCTGTACAAAGGAAGGATGGGG
genomic: CCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAGgttcgttcag ... gtttttgcagACATAAAGAGTTCTCTACAACAACCAAGTTCTGTACAAAGGAAGGATGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGACGAATCAAAACCACAAAAAAGTTTCGATTTTTACCCATTTCGCTGCCCCTGGATCGCTTTACTTCGAGTTGCATGAGCTCCCATTTCTCGCAAAGgttcgttcagttttcttccttcgctttcgattcgtgtaatgtcaccgttttctgattctaatttgcttcggaatttcattttctgctgttgttttttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG