1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAATCGGAGACAGGAAGAAGAAGAAGAGCATCCCCAGCGACGAATGAATGGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAGgtctcagatctagggctctctgtttcataattaattactctcctcactcactcgcattctttcttctttacttgcttcag
species | Glycine max |
transcript | GLYMA09G40650.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAG TTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCGEST: gi|193369486|gb|FK333962.1|FK333962
genomic: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAGgtctcagatc ... cttgcttcagTTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCG
EST: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAG TTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCGEST: gi|208217611|gb|GE010785.1|GE010785
genomic: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAGgtctcagatc ... cttgcttcagTTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCG
EST: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAG TTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCGEST: gi|9204170|gb|BE330394.1|BE330394
genomic: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAGgtctcagatc ... cttgcttcagTTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCG
EST: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAG TTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCG
genomic: GGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAGgtctcagatc ... cttgcttcagTTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCCAGTGCCAGGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATCGGAGACAGGAAGAAGAAGAAGAGCATCCCCAGCGACGAATGAATGGGCAATTGCGGAAGCAGAGAGGAATCTGCCGTAGTTTCCAAGGCTCAAGgtctcagatctagggctctctgtttcataattaattactctcctcactcactcgcattctttcttctttacttgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA