1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACATAGGACAGGCCCAAAACCAAAAAAAGCTTCTTTGTCTCTCGTGCCGATTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctctctctttctcttctctcttgttttttttttcttttggggggagggggggggggggggggggggggggggggggtttttcggttttttagg...
species | Glycine max |
transcript | GLYMA09G40060.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCACCACTATTCCCTTCACCCCGATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|192323627|gb|FK019038.1|FK019038
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: CTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|213589574|gb|DB973217.1|DB973217
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|151394416|gb|EV264287.1|EV264287
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: ACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|213617944|gb|DB967306.1|DB967306
genomic: ACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|120492016|gb|EH220183.1|EH220183
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: CCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|7686223|gb|AW756934.1|AW756934
genomic: CCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|19348498|gb|BM893030.1|BM893030
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|21888536|gb|BQ741749.1|BQ741749
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|254336245|gb|GR842424.1|GR842424
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|12773457|gb|BG238384.1|BG238384
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: CCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAATATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|23729522|gb|BU762853.1|BU762853
genomic: CCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: ATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|19348375|gb|BM892907.1|BM892907
genomic: ATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|14259242|gb|BG882150.1|BG882150
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCC----------G CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|254335608|gb|GR847136.1|GR847136
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|23057464|gb|BU578138.1|BU578138
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: CCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTEST: gi|213607370|gb|DB967079.1|DB967079
genomic: CCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
EST: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTG CTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
genomic: TTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctc ... ttcatggcagCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATAGGACAGGCCCAAAACCAAAAAAAGCTTCTTTGTCTCTCGTGCCGATTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGGTAGTTGTTGgtactctctctctctttctcttctctcttgttttttttttcttttggggggagggggggggggggggggggggggggggggggtttttcggttttttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg