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TCACCCTCACTCTGTTTCTGATTTCTCACTCTTCGTTTCTCGTTCGGTTCATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctttcttctctctctctctattgcccccttttgcaattcccctcccccttttctcctttctattcttttccacacttaaaaatcagatctttc...
species | Glycine max |
transcript | GLYMA09G39150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATTATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAEST: gi|15202361|gb|BI425361.1|BI425361
genomic: GGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGA-TATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAA
EST: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAACEST: gi|192302658|gb|FG994896.1|FG994896
genomic: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
EST: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAACEST: gi|4396612|gb|AI495609.1|AI495609
genomic: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
EST: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAACEST: gi|209708354|gb|BW683944.1|BW683944
genomic: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
EST: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAACEST: gi|209723765|gb|BW657734.1|BW657734
genomic: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
EST: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAACEST: gi|213594940|gb|DB971799.1|DB971799
genomic: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
EST: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCG GATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
genomic: ATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctt ... ctattttcagGATTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACCCTCACTCTGTTTCTGATTTCTCACTCTTCGTTTCTCGTTCGGTTCATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGgtgagctctttcttctctctctctctattgcccccttttgcaattcccctcccccttttctcctttctattcttttccacacttaaaaatcagatctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc