1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CACAATGGCTCCGAACTTCGACAATCGAAGATTCGTTCTCGCTCTTCGCATTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcgtgtccttcgttctacgcgacttttttcacgattcatgcatgcatcgcggccttaacgtgtttaatttctacgtgcag
species | Glycine max |
transcript | GLYMA09G38640.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATEST: gi|208096471|gb|GD892164.1|GD892164
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGAT
EST: GACCTTCGCTCAG GATTCTCTCGTGCTAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTEST: gi|192297697|gb|FG992775.1|FG992775
genomic: GACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGC-AGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCT
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCEST: gi|208273267|gb|GE072793.1|GE072793
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGCGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTEST: gi|26045883|gb|CA783315.1|CA783315
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCT
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCEST: gi|21889576|gb|BQ742789.1|BQ742789
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCEST: gi|151405478|gb|EV275292.1|EV275292
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCEST: gi|26269289|gb|CA820352.1|CA820352
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCEST: gi|298196962|gb|HO041705.1|HO041705
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCEST: gi|208156658|gb|GD955008.1|GD955008
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGCGCAGAACGCGAAGGAAGATTCCGGCGAATACTGTGGATCTEST: gi|7233753|gb|AW569096.1|AW569096
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAAT-CTGTGGATCT
EST: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAG GATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
genomic: TTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcg ... ctacgtgcagGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAATGGCTCCGAACTTCGACAATCGAAGATTCGTTCTCGCTCTTCGCATTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGgtaaacttcgtgtccttcgttctacgcgacttttttcacgattcatgcatgcatcgcggccttaacgtgtttaatttctacgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC