1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGCTTCCTTCTCTTCTCACACCTCCATGGCCCACACTTCCCTTCCCTCCGCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcctctccttattcattcgtttttcaattacttcttttttgcctgattcttatctgtttttgtaattcgcgtttcctgtggttttgttgattca...
species | Glycine max |
transcript | GLYMA09G38550.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGA ATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATAEST: gi|26268343|gb|CA819406.1|CA819406
genomic: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcct ... acttctgcagATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATA
EST: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGA ATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATAEST: gi|24206105|gb|BU965358.1|BU965358
genomic: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcct ... acttctgcagATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATA
EST: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGA ATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATAEST: gi|8283037|gb|BE020598.1|BE020598
genomic: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcct ... acttctgcagATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATA
EST: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGA ATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATAEST: gi|15813110|gb|BI785385.1|BI785385
genomic: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcct ... acttctgcagATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATA
EST: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGA ATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATA
genomic: GCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcct ... acttctgcagATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCTTCCTTCTCTTCTCACACCTCCATGGCCCACACTTCCCTTCCCTCCGCCGATGCCGGCATGGACGCTGTCCAGCGCCGTCTCATGTTCGAAGACGAgtccgttcctctccttattcattcgtttttcaattacttcttttttgcctgattcttatctgtttttgtaattcgcgtttcctgtggttttgttgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctcc