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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTCGTTGGCACCTGCTACCAAAGCCGCCACTAATTTGCGCCTCACACACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttactgttactgttactagtgctttcctctctctctttaattttccatacaataatgttccaaattacacaccgcactagttttatgtatgtatcttccatatctacaaatcacattttgttttatatatttaattgttgcactactcgtttatctatctatgtatattattatgtgcag

Basic information

species Glycine max
transcript GLYMA09G38440.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348210|gb|BI973805.1|BI973805
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
EST: gi|213605948|gb|DB956648.1|DB956648
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
EST: gi|8670260|gb|BE191367.1|BE191367
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
EST: gi|213604876|gb|DB956161.1|DB956161
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
EST: gi|209714756|gb|BW654106.1|BW654106
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
EST: gi|6134057|gb|AW132386.1|AW132386
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
EST: gi|120529588|gb|EH257722.1|EH257722
EST:     ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAG                         CCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG
genomic: ACTCTCTCCGCTTCTCTCCTAAACCCAACAACCTACGCTTTGCCACCAAGgttcgttact ... ttatgtgcagCCTGGTAATACGCTGTTATGCGCAAGGGTTAAGGCCCAATTAGATGAG