Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCTCCGCCGCGGCAGACGAGAACGGGGCTGTACAGTTAAACAGTAGTTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaattcttgtctttttttgcgtcattaattgttattcaagttttactttccaaaattcgattactttttaattaaattagatgtgatttcctt...

Basic information

species Glycine max
transcript GLYMA09G37020.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724848|gb|BW672631.1|BW672631
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAAT
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAAT
EST: gi|6483116|gb|AW202308.1|AW202308
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: gi|17964323|gb|BM271060.1|BM271060
EST:     TTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
genomic: TTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: gi|20448729|gb|BQ252853.1|BQ252853
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATT
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATT
EST: gi|120532139|gb|EH260272.1|EH260272
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: gi|37997541|gb|CF809130.1|CF809130
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: gi|9564128|gb|BE473637.1|BE473637
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: gi|7684793|gb|AW755441.1|AW755441
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: gi|19348174|gb|BM892706.1|BM892706
EST:     TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG                         CTGAAAGACTGGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTCTCCGCCGCGGCAGACGAGAACGGGGCTGTACAGTTAAACAGTAGTTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaattcttgtctttttttgcgtcattaattgttattcaagttttactttccaaaattcgattactttttaattaaattagatgtgatttcctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA