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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAATCGGAGGAGGGACAACACCATTAACAGGCCCAGATGGCGTTTGATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctccttcccttttctcttctcttctcttctctttctttcgctttttcctttcttcattcttcctttctattctctccgcag

Basic information

species Glycine max
transcript GLYMA09G36770.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057217|gb|BU577892.1|BU577892
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGG-CTCTTTACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|4300666|gb|AI443080.1|AI443080
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|9987763|gb|BE661871.1|BE661871
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|298165597|gb|HO011646.1|HO011646
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|19270747|gb|BM887003.1|BM887003
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|15813355|gb|BI785630.1|BI785630
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|298195324|gb|HO039155.1|HO039155
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCACTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|298181545|gb|HO025720.1|HO025720
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|27424921|gb|CA936441.1|CA936441
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|298164288|gb|HO013933.1|HO013933
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTACATCATTGAAGGCTCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|254342695|gb|GR858857.1|GR858857
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
EST: gi|151400607|gb|EV270421.1|EV270421
EST:     ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA
genomic: ATGGCCCAGGAATCACCCTCTCTCGACTCAGACAAAACCGCCACTGCTGGgtccctctcc ... ctctccgcagATTCTGCATCATTGAAGGCCCCGAAACTGTACAGGATTTTGCCAAGATGGA