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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGGATGCTTTAGTTTCGTGTAGTTATTGAGTTGTATGCTAGAAATTTCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataaatccctagctagagcctagaactagaattagattctgcctgtgatcatatattatattaacttgattattacgaaattcaattgcag

Basic information

species Glycine max
transcript GLYMA09G36160.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304524|gb|FG997896.1|FG997896
EST:     TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|151400158|gb|EV269972.1|EV269972
EST:     TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|48574977|gb|CO036172.1|CO036172
EST:     TCATATCCACAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|213620256|gb|DB961401.1|DB961401
EST:     TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|298174703|gb|HO014734.1|HO014734
EST:     TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|298191681|gb|HO035763.1|HO035763
EST:     TCATATCCGCAGGGGCAGAGAGTACAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|298171261|gb|HO016293.1|HO016293
EST:     AGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: AGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
EST: gi|254323598|gb|GR840239.1|GR840239
EST:     TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAG                         CTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG
genomic: TCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataa ... tcaattgcagCTGCTGCTGAAACGTAATCGATCTTATATCTACACTCTACCATGGACACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGATGGATGCTTTAGTTTCGTGTAGTTATTGAGTTGTATGCTAGAAATTTCATATCCGCAGGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGgtgatgataaatccctagctagagcctagaactagaattagattctgcctgtgatcatatattatattaacttgattattacgaaattcaattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG