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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGCGCCGACGCCGAACAAAAGCGCACGAAGCTCCAGgtacgtattcatttcaattgcagtacctaataaaactcacagtagatcaaaatccgattgcttttgctcctttaatttacaaatttccgtatttcattaa...

Basic information

species Glycine max
transcript GLYMA09G35970.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 1
ATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGCGCCGACGCCGAA-CAAAAGCGCACGAAGCTCCAGgtacgtattcatt-----tcaattgcagtacctaataaaactcacagtagatcaaaatccgattgcttttgctcctttaatttacaaatttccgtatttcattaa
| ||| || | || |||||||||||| ||||||||||||||||  |||| || | ||||  |  ||| ||   | | |  | || |  | |    | ||||||||  | | |         |   ||  ||    ||    ||||||         | | | |    |   | |  ||   |||       ||  | ||||     
AGCCGTCGGCACCATCGTCAAGAATCGCCGCCGCCGCTTCCGCTGGGTGCCCGACCTCGAGCGCCGCTCCTTGGACAAGGCCAAGGTCCGCTCCAC-CCAGgtactaactaaccacgaactagccgctctaatccattcccctcacatcgttctccatttcaagatatcacggtttttctgtttgatcccctctctctttc-----

upper sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G357620_T01 (Zea mays), 5'ss of exon 1
ATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGC------GCCGACGCCGAACAAAAGCGCACGAAGCTCCAGg---tacgtattcatttcaattgcagtacctaataaaactca-cagtagatcaaaatccgattgcttttgctcctttaatttacaaatttccgtatttcattaa
  |||  | | |  |||||||||| | |||||||||||||||||||||| |  | |||  ||  |||      | ||| ||| | |    |  |||  || |  | |   |||||  || |     |    |||||    ||| |  | |||| | |    | ||   ||| |||  |||   | | | |   | | | |          
CGCCGTTGGCGCGCTCGTCAAGAACCGCCGCCGCCGCTTCCGCATGGTGCCGGACCTCCACCGCCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAGgtatacgcgctacgtcctcctccgcttccgcgtaccggccaaatcaaagcagtcgctagccaaccagctgcctttcgtccgccactctgctg-tctgcttg---------

upper sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G028812_T01 (Zea mays), 5'ss of exon 1
ATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGCGCCGACGCCGAACAAAAGCGCACGAAGCTCCAGgtacgtattcatttca-attgcagtacctaataaaactcacagtagatcaaaatccgattgcttttgctcctttaatttacaaatttccgtat-ttcattaa
  ||| || | |  |||||||||| | |||||||||||||||||||||  || | |||| | | ||| || | | | |     |||||   ||  | ||||| ||||   |  ||      | |  || |       |  |  | || ||  | | |   ||||   |   |      |  ||    |  |||    ||| |
GGCCGTCGGCACGCTCGTCAAGAACCGCCGCCGCCGCTTCCGCATGGTCCCCGACCTCGACAAGCGCTCCCAGGTCCAGGCGCAGCGCCGCAACATTCAGgtccgtacgtacgtcgcgccaccgc-cccagcctcgtttccgtttga-caccagcagtcagcttcatcatatcgtgcgtggaatcaacattatacctattta

upper sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G476000_T01 (Zea mays), 5'ss of exon 1
ATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGCGCCGACGCCGAACAAAAGCGCACGAAGCTCCAGgtacgt--attcatttcaattgcagtacct--aataaaactcacagtagatcaaaatccgattgcttttgctcctttaatttacaaatttccgtatttcattaa
  ||| || | |  |||||||||| | |||||||||||||||||||||  || | |||| | | ||| |  | | |||     |||||   ||  ||||||| |||   | |    |    |  | ||||  | |  | | | || ||  |  ||||  | || ||| | || || |  |||     |||  |  |   | |  
GGCCGTCGGCACTCTCGTCAAGAACCGCCGCCGCCGCTTCCGCATGGTTCCCGACCTCGACAAGCGCTCGCAGGTCGAGACGGAGCGCCGCAACATCCAGgtccgtccgtcccgcccttccggcgaacctgcattgcagcacgcacta--tttaaatttgtttccttctccttctctccttttttccttttggattggaagt--