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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCACTCCCACCTGGCTCCATGGGTTGGCCTTACATAGGAGAAACCTTTCAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGgttcaactcactcttcatgccaacaactctttcactttctttaacggacagacatacagaaatttcaaattttttttttgttatctag

Basic information

species Glycine max
transcript GLYMA09G35250.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G35250.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0087g00710.t01 (Vitis vinifera), 5'ss of exon 1
TGCCACTCCCACCTGGCTCCATGGGTTGGCCTTACATAGGAGAAACCTTTCAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGgttcaactcactcttcatgccaacaactctttcactttctttaacggacagacatacagaaatttcaaattttttttttgttatctag
| || ||||||||||||||  |||| ||||| ||||||||||||||||||||  | || |||||  |||| ||||||||||||||||| ||   | | ||||| |   || |||    |       || |||  |||| | | |    |     |  ||| || |  |   | |    | ||    ||
TCCCTCTCCCACCTGGCTCTCTGGGCTGGCCCTACATAGGAGAAACCTTTCAGCTTTACTCTCAGAACCCCAATGTCTTCTTTGCCTCCAAGCAAGAGAGgttgataccaatctctcagtatgtttctgtttt-ctttgtatgatatgcttgttttgagatatattcatgctatgggctttttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608131|gb|DB972599.1|DB972599
EST:     CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAG                         GTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT
genomic: CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGgttcaactca ... tgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT
EST: gi|15287883|gb|BI471774.1|BI471774
EST:     CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAG                         GTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT
genomic: CAAATGTATTCTCAAGACCCAAATGTCTTCTTTGCCTCAAAAATAAAAAGgttcaactca ... tgttatctagGTTTGGCTCTATGTTTAAGTCCCACATTCTAGGTTGTCCCTGCGTGATGAT