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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCTTGTCGTTAGCTTTGTTAATATTCTCAAGCAAGTCGCAGAACATAGGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAGgttctattaaattcaacattaattaatgctcctgtttggatataagtgcttatggacaagtttatccaaacaggacgtcaggaccgttttgtttctgcatgttacttgttccttttgcttagatttgctactttccttttgtag

Basic information

species Glycine max
transcript GLYMA09G35240.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 5'ss of exon 2
GGACCTTGTCGTTAGCTTTGTTAATATTCTCAAGCAAGTCGCAGAACATAGGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAGgttctattaaattcaacattaattaa-tgctcctgtttggatataagtgcttatggacaagtttatccaaacaggacgtcaggaccgttttgtttctgcatgttacttgttccttttgcttagatttgctactttccttttgtag
|||  | || ||||| |||||||| || ||||| ||||| |||||    ||| | || |   | |||||||| ||||||||||||||||| || ||||||||  | | || |  |       | || | |   ||||||||  |      ||  | || |  ||||   |  ||    |    || ||| | | | ||||                                             
GGATTTGGTTGTTAGTTTTGTTAACATCCTCAAACAAGTTGCAGAGAGGAGGCTTCCAACTTCCTATGATTACCACCAAATGCCTGCACCATTTATTCAGgta-tgtgaactctattgagcttcaacttcctatgtttgga-gtcttcaattg-gcaccatcttatgtcattagatttt----actgttct-tatttgcag--------------------------------------------

upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G031352_T01 (Zea mays), 5'ss of exon 1
GGACCTTGTCGTTAGCTTTGTTAATATTCTCAAGCAAGTCGCAGAACATAGGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAGgttct---attaaattcaacattaattaatgctcctgtttggatataagtgcttatggacaagtttatccaaacaggacgtcaggaccgttttgtttctgcatgttacttgttccttttgcttagatttgctactttccttttgtag
|||  | || ||||| || ||||| || ||||| ||||| || ||    ||| | || |   | || ||||||||||||||||||||||| || |||||||| ||    ||||||| ||||||| ||| |  |   ||   | ||   ||   ||| |  |  | |             ||     |  |    | ||  |||| ||   |    | |  |||||||||  |   |  | |  | ||
GGATTTGGTTGTTAGTTTCGTTAACATCCTCAAACAAGTTGCTGAGAGGAGGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAGgtacttgagttaaattaaacattatttatttgttaggtgctgcta--ggttgctattgcgagttatgcttcttttatgggtttaagctttcagttgtcaccatgctatccggctatctgccttagattttgtttctgtcatcggcag

upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G031352_T02 (Zea mays), 5'ss of exon 2
GGACCTTGTCGTTAGCTTTGTTAATATTCTCAAGCAAGTCGCAGAACATAGGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAGgttct---attaaattcaacattaattaatgctcctgtttggatataagtgcttatggacaagtttatccaaacaggacgtcaggaccgttttgtttctgcatgttacttgttccttttgcttagatttgctactttccttttgtag-----------------------------------
|||  | || ||||| || ||||| || ||||| ||||| || ||    ||| | || |   | || ||||||||||||||||||||||| || |||||||| ||    ||||||| ||||||| ||| |  |   ||   | ||   ||   ||| |  |  | |             ||     |  |    | ||  |||| ||   |    | |  |||||||||  |   |  | |  | ||                                   
GGATTTGGTTGTTAGTTTCGTTAACATCCTCAAACAAGTTGCTGAGAGGAGGCTTCCGACTTCCTACGATTATCACCAAATGCCTGCACCATTTATTCAGgtacttgagttaaattaaacattatttatttgttaggtgctgcta--ggttgctattgcgagttatgcttcttttatgggtttaagctttcagttgtcaccatgctatccggctatctgccttagattttgtttctgtcatcggcagataaaactattgaagatacttgctgtgcttggcag

upper sequence: GLYMA09G35240.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 5'ss of exon 1
GGACCTTGTCGTTAGCTTTGTTAATATTCTCAAGCAAGTCGCAGAACATAGGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAGgttctattaaattcaacattaattaatgctcctgtttggatataagtgcttatggacaagtttatccaaacag-gacgtcaggaccgttttgtttctgcatgttacttgttccttttgcttagatttgctactttccttttgtag
|||  | ||    || || ||||  |||||||| || ||| | ||    || ||||| |||| |||||||||||| |||||||||||||| || || ||||||   |     |   | ||| ||  | ||| ||||  |||||     ||||       |||| | |||   | ||    |  |   ||| |||| |                                                
GGATTTGGTTAGCAGTTTCGTTAGCATTCTCAAACAGGTCACTGAGAGAAGATTGCCTAAGAGTTATGATTATCATCAAATGCCTGCACCTTTTATCCAGgtttcgt--gtctttgctttagtt--ttctcttgtt--gatat-----ctta-------gtttttgcaactggtgataataaaaaaatttggtttttag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193359383|gb|FK326330.1|FK326330
EST:     GGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAG                         ATTAAGTTGCTGAAAATACTTGCGTTACTGGGAAGTGGCGACAAGCAAGCT
genomic: GGTTGCCCAAGACTTATGATTATCACCAAATGCCTGCACCCTTCATTCAGgttctattaa ... ccttttgtagATTAAGTTGCTGAAAATACTTGCGTTACTGGGAAGTGGCGACAAGCAAGCT